PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964051.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 1086aa MW: 120332 Da PI: 6.6487

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.7	7.1e-21	134	234	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++i ++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_024964051.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHI-YRQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 224 99***************************9445444.38***********7.5667799********************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_024964051.1 225 QQLLLGIRRA 234 889**997 PP
2	Auxin_resp	115.8	3.7e-38	259	342	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdld vrW+nS+Wr+L+ XP_024964051.1 259 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDGVRWKNSQWRNLQ 342 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence
MKMPANSSGS TLTTANHGEG GAKNRIINPE LWQACAGPLV NLPASGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLQS KLLCILHDVT LHADTETDEV YAQMTLQPVP SFDKEALLRS 120 DLLMKAHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH 180 DNVWTFRHIY RQPKRHLLTT GWSLFVSGKR LFAGDSVLFI RDEKQQLLLG IRRANRQPAN 240 LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAVCSNQISL 300 GMRFRMMFET EESGTRRYMG TITGISDLDG VRWKNSQWRN LQVGWDEATA GERRNRVSIW 360 DIEPVTSPFF ICPTPPFYQS KRPRQQGMLG DESADIDNLV KRTMPWLGED MSMKDPGLSL 420 VQWMNMQQGS SLANQIQPSY LNPLAGSVLQ NYGGPDLSRQ LGLSAPQMLT QNNLQFNNQR 480 STSQLDQLQK LPQPATTTNP LAVMMQPQQL TDLTQQTVRQ TLINQTLPQN QIQSQIPSQN 540 VLQQQSMQNH EFQRNLQLQQ QQQMMAVSQN QQKISLPSQF PDQQISQKLQ MPENQIQLLQ 600 KLHHQQQALL AQQGQHPQDQ QKPLIDVPQS FARSIPTSQM MEMPSQIPIT SQPQQMPRKN 660 SEANFRFSHL SQQPKLQHQQ PELSGQMTGA TPMPINLLST NGSSLLTGTA GGGQSGISDD 720 VPSCSTSPST NNCPNMVPSI VNGRSYGSTT MGGEEIIQAS AHLMNTTGLE TVSANGNFVK 780 ELQQKADVKP SVNVSKIHNQ GFLAPQTYLH NLAGTQMDYL DSSSSATSVC LSQNDVHLQP 840 QNSNQLSFNS QPLPFRDTIQ DGEVQDDPRA DIPFGVNMDN RLGMSSVIPD PLLTKGMMGS 900 GKDFQNNHSS GGMISSYENP SKDTQPELSS SMVSQSFGVP DMTFNSIDST INDSSLLNSA 960 VWAPPPQQFQ RMRTYTKVYK RGAVGRSIDI TAYSGYDELK QDLARRFGIE GQLEDRQRIG 1020 WKLVYVDHES DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGGN SVLPNQACSS 1080 SGGGKV

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence

MKMPANSSGS TLTTANHGEG GAKNRIINPE LWQACAGPLV NLPASGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLQS KLLCILHDVT LHADTETDEV YAQMTLQPVP SFDKEALLRS  120
DLLMKAHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH  180
DNVWTFRHIY RQPKRHLLTT GWSLFVSGKR LFAGDSVLFI RDEKQQLLLG IRRANRQPAN  240
LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAVCSNQISL  300
GMRFRMMFET EESGTRRYMG TITGISDLDG VRWKNSQWRN LQVGWDEATA GERRNRVSIW  360
DIEPVTSPFF ICPTPPFYQS KRPRQQGMLG DESADIDNLV KRTMPWLGED MSMKDPGLSL  420
VQWMNMQQGS SLANQIQPSY LNPLAGSVLQ NYGGPDLSRQ LGLSAPQMLT QNNLQFNNQR  480
STSQLDQLQK LPQPATTTNP LAVMMQPQQL TDLTQQTVRQ TLINQTLPQN QIQSQIPSQN  540
VLQQQSMQNH EFQRNLQLQQ QQQMMAVSQN QQKISLPSQF PDQQISQKLQ MPENQIQLLQ  600
KLHHQQQALL AQQGQHPQDQ QKPLIDVPQS FARSIPTSQM MEMPSQIPIT SQPQQMPRKN  660
SEANFRFSHL SQQPKLQHQQ PELSGQMTGA TPMPINLLST NGSSLLTGTA GGGQSGISDD  720
VPSCSTSPST NNCPNMVPSI VNGRSYGSTT MGGEEIIQAS AHLMNTTGLE TVSANGNFVK  780
ELQQKADVKP SVNVSKIHNQ GFLAPQTYLH NLAGTQMDYL DSSSSATSVC LSQNDVHLQP  840
QNSNQLSFNS QPLPFRDTIQ DGEVQDDPRA DIPFGVNMDN RLGMSSVIPD PLLTKGMMGS  900
GKDFQNNHSS GGMISSYENP SKDTQPELSS SMVSQSFGVP DMTFNSIDST INDSSLLNSA  960
VWAPPPQQFQ RMRTYTKVYK RGAVGRSIDI TAYSGYDELK QDLARRFGIE GQLEDRQRIG  1020
WKLVYVDHES DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGGN SVLPNQACSS  1080
SGGGKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein