PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964053.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LSD

Protein Properties

Length: 178aa MW: 18820.7 Da PI: 8.0707

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.4	2e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ V XP_024964053.1 7 CSGCRSILLYPRGASNVCCALCNSV 31 ***********************98 PP
2	zf-LSD1	47.9	2.2e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+ V XP_024964053.1 46 CGGCRTLLMYTRGATSVRCSCCHIV 70 ***********************98 PP
3	zf-LSD1	38.3	2.2e-12	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C +Crt+L+YP+G psV+Ca+C+ XP_024964053.1 84 CANCRTMLMYPYGPPSVKCAVCHY 107 9*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MQSQIVCSGC RSILLYPRGA SNVCCALCNS VTSVPPSGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHIV NLAPVSNQLA QVNCANCRTM LMYPYGPPSV KCAVCHYITN VNASNGRVPI 120 PVQPNATTTP ESMPSTSTDM PSSHTQTIVV ENPNSVDENG KLVSNVVVGV TTEKKSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-67	LSD family protein