PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964109.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 897aa MW: 102015 Da PI: 6.5961

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.7	1.5e-25	646	707	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy WrKYG K++ +s++pr+YYrC s+ +C ++k+vers++dp+++++ Y+g+H+++ XP_024964109.1 646 LDDGYVWRKYGEKKILNSKYPRQYYRCNSKilhNCYATKQVERSTKDPSFFIVAYSGNHTCP 707 59************************99999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MESLIGKNSD ADEVHFDNSI TSRLTPEVPP SPKLAKLFLQ EKSSLTMLPP SFFEHVLVLK 60 VLDLSHASIQ SLPPSISKLC LLEEFILREC SLLIEVPPEI GAVKNLKVFD LEGTEIMYLP 120 KEIGKLETLE CLRVSLSAYA DDYKDRNDIE HIIPRKTISK LTKLKELSIS VDPEAKWWEV 180 EVLEAIMHDL LVLPDLNTLK LCLPTTKLVQ QFLRLERYQV PIFSGLWNFR FMIGKCEQLP 240 FSVQLDMEEN FLKLEKCVKY MNGEGCMDEN AELIRQARAL YLRRHWTIEK LSVFDIRRLK 300 YCLLMECNEM QTLVHQXDVY EDXNKATNXG EDVILESLQF LALHXMKKLQ RISMGPIGKK 360 SLSCLRILAL HTCPELTSIF VGCLLDNFEN LTELIVEDCP KVKSLVTLEA TSWSKGPFLP 420 NLKRVSLLDL PELVSISSGV CIAPQLDTLL VFNCMSLDYL SIMELXRHTK XIKGETEWWD 480 ALKYGKLTWN SVFVQIKRDG GLMDQLAEDT NSLQHFLELP MVPTHPGSSL QVDENSPRDD 540 HPGLTEIREQ VEQLQIDHNV PFFDETREMS TQKILNSDDD TQSQYAGTAV RLWDSPCPAS 600 GKLQNEDKDR DCNVPFHKDA FLKKRGCYKR RRQAKVIKRI AIEEPLDDGY VWRKYGEKKI 660 LNSKYPRQYY RCNSKILHNC YATKQVERST KDPSFFIVAY SGNHTCPRIL STNCSSTATE 720 LAARTVRTRD SSPATESAST INDSSFQNPT RLQSLDLKKK NTRNAECTTQ VKIILKTGFD 780 KPPDDGYAWS KYGIKRIKGA DFRISGSASI QKWEQVESDI QSSFSPPFIL ESSSSCVTSK 840 ANMITSEVVG NSSRNLPSSA NTPEDAKEFP LPAFMASKEM GDKITKFHQL VCPSGKV

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MESLIGKNSD ADEVHFDNSI TSRLTPEVPP SPKLAKLFLQ EKSSLTMLPP SFFEHVLVLK  60
VLDLSHASIQ SLPPSISKLC LLEEFILREC SLLIEVPPEI GAVKNLKVFD LEGTEIMYLP  120
KEIGKLETLE CLRVSLSAYA DDYKDRNDIE HIIPRKTISK LTKLKELSIS VDPEAKWWEV  180
EVLEAIMHDL LVLPDLNTLK LCLPTTKLVQ QFLRLERYQV PIFSGLWNFR FMIGKCEQLP  240
FSVQLDMEEN FLKLEKCVKY MNGEGCMDEN AELIRQARAL YLRRHWTIEK LSVFDIRRLK  300
YCLLMECNEM QTLVHQXDVY EDXNKATNXG EDVILESLQF LALHXMKKLQ RISMGPIGKK  360
SLSCLRILAL HTCPELTSIF VGCLLDNFEN LTELIVEDCP KVKSLVTLEA TSWSKGPFLP  420
NLKRVSLLDL PELVSISSGV CIAPQLDTLL VFNCMSLDYL SIMELXRHTK XIKGETEWWD  480
ALKYGKLTWN SVFVQIKRDG GLMDQLAEDT NSLQHFLELP MVPTHPGSSL QVDENSPRDD  540
HPGLTEIREQ VEQLQIDHNV PFFDETREMS TQKILNSDDD TQSQYAGTAV RLWDSPCPAS  600
GKLQNEDKDR DCNVPFHKDA FLKKRGCYKR RRQAKVIKRI AIEEPLDDGY VWRKYGEKKI  660
LNSKYPRQYY RCNSKILHNC YATKQVERST KDPSFFIVAY SGNHTCPRIL STNCSSTATE  720
LAARTVRTRD SSPATESAST INDSSFQNPT RLQSLDLKKK NTRNAECTTQ VKIILKTGFD  780
KPPDDGYAWS KYGIKRIKGA DFRISGSASI QKWEQVESDI QSSFSPPFIL ESSSSCVTSK  840
ANMITSEVVG NSSRNLPSSA NTPEDAKEFP LPAFMASKEM GDKITKFHQL VCPSGKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-22	WRKY family protein