PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964226.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 821aa MW: 89849.3 Da PI: 4.6227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	2	33	12	45
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_024964226.1 2 LIKAHQVYGNK-WAELTKFLP-GRTDNAIKNHWN 33 89*******.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MLIKAHQVYG NKWAELTKFL PGRTDNAIKN HWNSSVKKKL DSYMASGLLA QVQGLPCVNH 60 TNQSTPTTSR THQFSGDDSI HKDTAEVEET SECSQGSTFL RCSHSNNDIA KDENQSTDMA 120 KAIVLYNGDE NHQADMGKAV VLYTGDDTQP AENLNHGIDP SSSANTSLPS DLVDSSKLIE 180 QNYLHGWQTS DRGQFSSNEL QNLSSLGLTG ESEFTHCKDV DQKQESVRKR IQSSAGFSIS 240 TSVVNDVVGS DMLTQMLTSE DDCSKVMHPP DGSLGSLVYQ QSNCEIPCAD NSNSKSYYSE 300 FVGTASYQSI CMPSQLPTCI FDGESYQYNC LSVGNQEFTG LAHDGLTYTN DSSNSHFFTN 360 QDNAGSKDQI DQAKDPVELL SSDAIGSGQL NVTEIDPSVD ENLVSQTQQQ EPGTLSYEPP 420 RFPSMDIPFL SCDLIQSGGD MQHEYSPLGI RQLMMTSMNC FSPCRLWDSP SLYDSPEDVL 480 KSAAKTFTCT PSILKKRNRD LLSPLSERRF GKKLEHVSFI NSAKDSSQSE VMFDENKNQQ 540 LPSSSQTADS GPFIDDKENL DPTEEITQKE GGKSTPVKVQ LPPALIEQNL DDESFLPDKV 600 ATISATPKGP HATAPGKLSS MILETTVDPL TLIPSACKNP CQSLVSPHTV SGKRNKAGSR 660 FAASIQTEFM VENDAFVENL GMFGETPLKK SLESPSAWKS PWFSFLPGPR VDTDITIEDI 720 GYFTSPGERS YDALGLMKQL SEHTASAYAN AQEILGDETP DSILKKRFSE KGEKSQNVLT 780 ERRVLDFSEC GSPRKGEQGG SRHSSGISFS SPSSYLLKGC R

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MLIKAHQVYG NKWAELTKFL PGRTDNAIKN HWNSSVKKKL DSYMASGLLA QVQGLPCVNH  60
TNQSTPTTSR THQFSGDDSI HKDTAEVEET SECSQGSTFL RCSHSNNDIA KDENQSTDMA  120
KAIVLYNGDE NHQADMGKAV VLYTGDDTQP AENLNHGIDP SSSANTSLPS DLVDSSKLIE  180
QNYLHGWQTS DRGQFSSNEL QNLSSLGLTG ESEFTHCKDV DQKQESVRKR IQSSAGFSIS  240
TSVVNDVVGS DMLTQMLTSE DDCSKVMHPP DGSLGSLVYQ QSNCEIPCAD NSNSKSYYSE  300
FVGTASYQSI CMPSQLPTCI FDGESYQYNC LSVGNQEFTG LAHDGLTYTN DSSNSHFFTN  360
QDNAGSKDQI DQAKDPVELL SSDAIGSGQL NVTEIDPSVD ENLVSQTQQQ EPGTLSYEPP  420
RFPSMDIPFL SCDLIQSGGD MQHEYSPLGI RQLMMTSMNC FSPCRLWDSP SLYDSPEDVL  480
KSAAKTFTCT PSILKKRNRD LLSPLSERRF GKKLEHVSFI NSAKDSSQSE VMFDENKNQQ  540
LPSSSQTADS GPFIDDKENL DPTEEITQKE GGKSTPVKVQ LPPALIEQNL DDESFLPDKV  600
ATISATPKGP HATAPGKLSS MILETTVDPL TLIPSACKNP CQSLVSPHTV SGKRNKAGSR  660
FAASIQTEFM VENDAFVENL GMFGETPLKK SLESPSAWKS PWFSFLPGPR VDTDITIEDI  720
GYFTSPGERS YDALGLMKQL SEHTASAYAN AQEILGDETP DSILKKRFSE KGEKSQNVLT  780
ERRVLDFSEC GSPRKGEQGG SRHSSGISFS SPSSYLLKGC R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-95	MYB family protein