PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964262.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22765.2 Da    PI: 9.7667
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161559145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krien+  r vt+skR n i+KKA+ L +LC +++a+i+fs  gk
  XP_024964262.1 15 KRIENEKERAVTLSKRCNDIFKKANKLATLCHIQIAIILFSIIGK 59
                    79**************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARLPSKDRK KIQLKRIENE KERAVTLSKR CNDIFKKANK LATLCHIQIA IILFSIIGKR  60
LSFGSPNVQS VVNKFLNPNQ LDQQPNDFIN MAVNSNHESK LQDFNKEFDE VNEHLANEKK  120
QGQMLDEYIK RLLGGKTYKE YVAIRGYYGF MQIKFKMEEL QRNKECTLVA VCGPSSSNDE  180
NEAYLSKIGV PKDYLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-20M-type_MADS family protein