PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964263.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 14689.3 Da PI: 10.398

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.8	1.6e-19	15	56	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 krien+ r vt+skRrngi+KKA+ L +LC +++a+i+fs XP_024964263.1 15 KRIENDKERAVTLSKRRNGIFKKANXLATLCRIQIAIILFSI 56 79**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence
MARLPSKGRK KIQLKRIEND KERAVTLSKR RNGIFKKANX LATLCRIQIA IILFSISXKP 60 LSFGSPNVQS VVNKFLNPNQ VDQQPNDFIN MAVNSNHEPK LQDFNKEFDE VNEHLANEKK 120 QEQMFDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	9e-26	M-type_MADS family protein