PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964433.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 369aa    MW: 42207.2 Da    PI: 9.7485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002125148123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F +++ L +H +  H
  XP_024964433.1 125 YICRVCGRKFYNNERLINHFNQiH 148
                     89*****************87666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MVSLVKFCTK RTITTVFKII RHHHFNTDRA LKIPDAFASV NGGGRNIVAV FWDLDNKPPR  60
SIPPFDAAIR LKKAAESFGD VRFKIAYANQ RSFDYIPPAV RVHRKDRKAL NQLENKGVVK  120
PADPYICRVC GRKFYNNERL INHFNQIHER EHMKRVAQIA SARGSQRVKL VGKYSMKMEK  180
YSNAARDILT PKVGYGLGDE LKRAGYWVST VSNKPQAADI ALKNHIVDLM DKRQMECLIL  240
VSDDSDFVEV LKEARLRCLK TVVVGDADGG SLKRVSDAAY SWEEIIMGKA KKEAVSVVCR  300
WKDRDILRRL EWTYDYKTER RLYSSCSDDD EQIDDLDTSN LGFGEDHGIK TDRNRAWWKL  360
ESDSDAASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-140C2H2 family protein