PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964513.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 342aa MW: 38508 Da PI: 9.7117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.9e-13	77	164	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC........................................TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas.....................................kapskKlsKaeiLekAveYIksLq 55 n+ E+rRRdri ++++ Lrel+P++ + + +K++iL Av+YIk Lq XP_024964513.1 77 INATEKRRRDRITDRIFALRELVPNCNkvgpwclgepsnliysillcfwcislisspffsffilNVMCLQRDKVSILGDAVDYIKFLQ 164 599********************888********************************8899999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MRLAAILTWS RFDVGQSSGS KRKADDIEGN IEKERELKSK QQHDGRQPGT QRVERELNSK 60 QQHDSRQPGS QRVATQINAT EKRRRDRITD RIFALRELVP NCNKVGPWCL GEPSNLIYSI 120 LLCFWCISLI SSPFFSFFIL NVMCLQRDKV SILGDAVDYI KFLQMQIQMT QHMGVGSMSQ 180 GLYMSQTRQP CLQVPNLAPH HFMRPMIGMQ YGVPQFGSYV PTNIPTFPPF FSGFPPLVPP 240 VYPGTGSLPW GQTRPLIPPQ ELRFPSQASQ STIPFSDTII PTTFSQAGST DVLGQPLYHV 300 PVTSQDPGFT SWSLISVYDT STSLNRAHGR FTCRSASKYA RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MRLAAILTWS RFDVGQSSGS KRKADDIEGN IEKERELKSK QQHDGRQPGT QRVERELNSK  60
QQHDSRQPGS QRVATQINAT EKRRRDRITD RIFALRELVP NCNKVGPWCL GEPSNLIYSI  120
LLCFWCISLI SSPFFSFFIL NVMCLQRDKV SILGDAVDYI KFLQMQIQMT QHMGVGSMSQ  180
GLYMSQTRQP CLQVPNLAPH HFMRPMIGMQ YGVPQFGSYV PTNIPTFPPF FSGFPPLVPP  240
VYPGTGSLPW GQTRPLIPPQ ELRFPSQASQ STIPFSDTII PTTFSQAGST DVLGQPLYHV  300
PVTSQDPGFT SWSLISVYDT STSLNRAHGR FTCRSASKYA RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-10	bHLH family protein