PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964559.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 275aa    MW: 30992.6 Da    PI: 7.7228
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.71.3e-2743152389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasecea 75 
                     g+kdrhsk+ T +g+RdRR+Rls+++a++++ Lqd+LG+ ++sk i+WLl + k  i++l+ +                      s         
  XP_024964559.1  43 GGKDRHSKVLTVKGLRDRRIRLSVPTAIQLYHLQDQLGLSQPSKVIDWLLDATKDDIDKLPPLqmtpegfnrfhippkfvpqdfnS--------- 128
                     79*************************************************************44444444433333222222110......... PP

             TCP  76 esssssasnsssg...................k 89 
                        +        +                   +
  XP_024964559.1 129 --TQL-------AfspffnalnydhnlidginQ 152
                     ..111.......011222233333334444321 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MINNTYDQEG DINHQKLANI SPISRPYSGS NNPRIVRVSR EFGGKDRHSK VLTVKGLRDR  60
RIRLSVPTAI QLYHLQDQLG LSQPSKVIDW LLDATKDDID KLPPLQMTPE GFNRFHIPPK  120
FVPQDFNSTQ LAFSPFFNAL NYDHNLIDGI NQQRTNKGKE AMQAENKYCN YSYDHLQPSS  180
NLSISRFSHQ PADGNYASIL PYSSLSSTSD PQFFSCFSGA TTPSFFPPYL MPNHFQFLSS  240
SNSVPLNLID STQEKVVPFG LNMNSKVSPQ SNDDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-44TCP family protein