PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964593.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 204aa    MW: 24135.2 Da    PI: 10.6339
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.6e-154684341
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    i  +  r++t+ kR++gi+KKA E  vLCd++  +ii+ 
  XP_024964593.1 46 ITKEKTRNTTYQKRKHGIIKKAIEFTVLCDVDTIIIIYY 84
                    6677889*************************9999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MCISVYILSR CIYKLRSLPG YLNFHSYWNP TLLQFGVRIK LRIELITKEK TRNTTYQKRK  60
HGIIKKAIEF TVLCDVDTII IIYYNQPEIW PENPNQIKYT IASYKVKKVK LGRELTTSRT  120
SFRTERKRLK TSLSRPRKET WNPSTQLGSM SLMVYRRGNR EIFYRIGKRG DYCERPARTQ  180
EEKHQRADAN AIPVYSPCGF VPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-12M-type_MADS family protein