PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964678.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26239 Da    PI: 9.2523
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.9e-202573149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i++   rqvtfskRr+g++KKA+EL+vL++a++a+ + s+ g+++ +
  XP_024964678.1 25 KKIQEPNSRQVTFSKRRAGLFKKASELCVLTGAQIAIFVNSPGGRVFAF 73
                    57888899*************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVTANVAGGL SMNKKTKGRK KIEIKKIQEP NSRQVTFSKR RAGLFKKASE LCVLTGAQIA  60
IFVNSPGGRV FAFGHPNADL LADRYLNENN IDTTTTTTAV QNYQPPLPAM YQFNQHYVEV  120
TRELEMEKMR RELIPAERSG GSQWYEEAVD GMEVEELEQY LYSLEQLKKK VVMRADELMM  180
IKKTPTLLGS NLFNQMGWNN HIQTMDIPTT TTTTTVHHGG FNLHHGGEIG KF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-22M-type_MADS family protein