PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964750.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 237aa    MW: 26915.8 Da    PI: 6.1585
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.83.8e-5474168195
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isfvt+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yre++g
  XP_024964750.1  74 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFVTGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREFDG 168
                     69******************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MADLQVNQPE MMKAIIFMSL FFFFLIHISC NWFLPNRVTY LLRPGMQQQT DMKLKLPEMT  60
NTNNPSTDDN ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFVT  120
GEANDRCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTVYL HRYREFDGGE RGSIRGEPLV  180
KRAADPGPYA FVPAAFHHHN GFFGPASIGG FFKDPSVAGP SGPTAVAGFE PYAHCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.24e-68NF-YB family protein