PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964792.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 163aa    MW: 17945.1 Da    PI: 4.6858
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.71.2e-1218113695
           NF-YB   6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      +lP a v r++k  l +      + ++ kd+     e    fi ++++ a+d c++ kr+tin++d++ al ++ f ++v++l++ l++++  +
  XP_024964792.1  18 DELPKAIVRRLVKDKLSQlsqdggEIQVLKDSLLAFSESSRIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFVASLRTSLEEFKRKN 112
                     5799999999999988752221113356788888999999*************************************************998765 PP

           NF-YB  95 g 95 
                     +
  XP_024964792.1 113 A 113
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MVTAATPTAG EKVVADADEL PKAIVRRLVK DKLSQLSQDG GEIQVLKDSL LAFSESSRIF  60
IHYLSATAND ICKESKRQTI NAEDVFKALE EIEFPEFVAS LRTSLEEFKR KNAKRKSESA  120
KSKEAKKSKT EEPPMENGEA QENGEEDRND AATAAVVVVV DSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.19e-37NF-YB family protein