PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965069.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21619.6 Da    PI: 9.4553
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.9e-201559145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krien+  r vt+skRrngi+KK +EL +LC +++a+i+fs +gk
  XP_024965069.1 15 KRIENDKERAVTLSKRRNGIFKKVNELATLCRIQIAIILFSISGK 59
                    79***************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MARLPSKGRK KIQLKRIEND KERAVTLSKR RNGIFKKVNE LATLCRIQIA IILFSISGKP  60
LSFGSPNVQS VVNKFLNPNQ VDQQPNDFIN RAINSNHEPK LQDFNKEFDE VNEHLANEKK  120
QGQMLDEYIK RLLGGKTYEE YVAIHGHHGL MQIKFKMEEL QRNKECTLDA ECGSSSSNDE  180
NEAHLSKIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.19e-27M-type_MADS family protein