PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965248.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 255aa MW: 28248.8 Da PI: 8.3476

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++ L H+r+H XP_024965248.1 161 HECSICGSHFTSGQALGGHMRRH 183 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MEVHQEDVMI MEEMKMHIKG KRSKRPRPSS ALTLTIASTS SSSSTTTTTT DGAPPTNSNI 60 DFTTILQDNH DNNDEYVANC LILLAHGQYL PPSDTRLYVY ECKTCSRGFT SFQALGGHRA 120 SHKKPHKDVR EISKNRTSLW ICPNKPLSCN PSGSTKGPKV HECSICGSHF TSGQALGGHM 180 RRHRSVMPTT TYTSTTTTCT TSDEHHKSKK HKTLLPLDLN LPAPIEDDHN ETKSPFGLNN 240 QIIVFSTPSL VDCHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-44	C2H2 family protein