PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965325.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WOX
Protein Properties Length: 252aa    MW: 27823.9 Da    PI: 6.7856
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.11.9e-202887357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     R+++tkeq+  Le+l+ +  r+p+ae+++e++++l    +++ ++V++WFqN++a++++
  XP_024965325.1 28 GRWNPTKEQIAMLENLYGQgLRTPTAEQIQEITSRLqtygHIEGKNVFYWFQNHKARQRQ 87
                    5*****************99**************************************97 PP
2Wus_type_Homeobox113.88.4e-372789365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       + RW+Pt+eQi +Le+ly +GlrtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq
     XP_024965325.1 27 SGRWNPTKEQIAMLENLYGQGLRTPTAEQIQEITSRLQTYGHIEGKNVFYWFQNHKARQRQKQ 89
                       68***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDGGSTSGTS EAPTAVVGDG AAGSPVSGRW NPTKEQIAML ENLYGQGLRT PTAEQIQEIT  60
SRLQTYGHIE GKNVFYWFQN HKARQRQKQK QDHLLLFRQY HHHQLRCPPP FLSLPPSPNV  120
IYEPCYMPQN SLGFYGQCPQ VVSPSTGRRR SPRSTKPRSP DDGGFLLTHQ PESVVTLAGG  180
HNTMVKDQEE DIINGRSSSD QETLDLFPLH PTGNLQERED TTSNASCTIA STACTLSSSG  240
GAIDRLYFDF FA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.18e-38WOX family protein