PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965331.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 573aa    MW: 64193.4 Da    PI: 4.9288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.76.2e-981845661374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalklfse 86 
                     lv+lLl+cAeav  +d++la+++L+++   a+p gd++qR+  +f+ +L++rl+  ++++ +  + s ++             +e++ a++l+++
  XP_024965331.1 184 LVHLLLACAEAVGCRDTQLADSILSKIWYSANPLGDSLQRVSYFFAMGLKSRLSLLQTNVNANGTISISNGWGratlptdiqREEKIEAFHLLHQ 278
                     68***************************************************98666655444333332111234455566999********** PP

            GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     ++P++kf++++aN+aI +a++g++++HiiD+++++ lQWp+L+++L s +    +p  +RiTg+   + +  e  ++++e +   A++lg+++ef
  XP_024965331.1 279 TTPYIKFGFIAANEAIFQAAKGKDCLHIIDLGMEHTLQWPSLIRTLGSTTdggVSPKLIRITGILGDRGEMMELESSMKETIVAEANSLGIEVEF 373
                     ***********************************************998554447799*****995544555556899**************** PP

            GRAS 179 nvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     +++    + ++l+ e+Lr+k+gE l Vn++l+lh+ ++es  + +   ++L++vk+l P++++vveq+a+hn++ Fl rfle+l+yysa+fdsle
  XP_024965331.1 374 RLISGPaTPAMLTKENLRLKEGEPLFVNSILHLHTYVKESRGSLK---TILQAVKKLGPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLE 465
                     **8444488999*************************87776666...9********************************************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrp 366
                     a+++r+s er k+Er  +++ei+n+va eg+er+erhe++ +Wr++l++aGF+ v+  ++ +++a   ++ ++  gy+v ++++  v lgWk+rp
  XP_024965331.1 466 ASMGRNSIERLKIERNHFAEEIRNIVAYEGTERVERHERADQWRRQLGRAGFQVVAGVKERQATAMKSVSGCD--GYTVGNDQKGHVlLGWKGRP 558
                     ******************************************************9988877777777777776..****988655555******* PP

            GRAS 367 LvsvSaWr 374
                     ++ +S W+
  XP_024965331.1 559 IMLASTWQ 566
                     *******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MEPINHFGFS FNNIHQKLPI RQFSQAARVE EQHQLLAEES WELLQHFDDQ VYPSGMATSV  60
DSMEEYQFVD SFFNIDHIHH GELPSSPEEN HLDQLFDSFL HDVDLNSFLM PNDPMLIQEE  120
YDLIDMSSSC EDTAFVSSLS SSSLSDISIQ PIYDNSTTTF ITSTIEDQDQ DRLRVNGVDD  180
GLQLVHLLLA CAEAVGCRDT QLADSILSKI WYSANPLGDS LQRVSYFFAM GLKSRLSLLQ  240
TNVNANGTIS ISNGWGRATL PTDIQREEKI EAFHLLHQTT PYIKFGFIAA NEAIFQAAKG  300
KDCLHIIDLG MEHTLQWPSL IRTLGSTTDG GVSPKLIRIT GILGDRGEMM ELESSMKETI  360
VAEANSLGIE VEFRLISGPA TPAMLTKENL RLKEGEPLFV NSILHLHTYV KESRGSLKTI  420
LQAVKKLGPT LLTVVEQDAN HNGPFFLGRF LESLHYYSAI FDSLEASMGR NSIERLKIER  480
NHFAEEIRNI VAYEGTERVE RHERADQWRR QLGRAGFQVV AGVKERQATA MKSVSGCDGY  540
TVGNDQKGHV LLGWKGRPIM LASTWQPSSP SPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-65GRAS family protein