PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965515.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 667aa MW: 74774.4 Da PI: 5.874

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.3e-22	121	221	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_024965515.1 121 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 211 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_024965515.1 212 NGELRVGVRR 221 999***97 PP
2	Auxin_resp	110	2.5e-36	247	329	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a ++k+ vGmRfkm+fe+e+++err+sGt+vgv d+ +++W +S+WrsLk XP_024965515.1 247 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLLVGMRFKMRFEGEEVPERRFSGTIVGVGDTASSKWLDSEWRSLK 329 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MGHIAGTHYP GGPQSGSLGD AIYKELWHAC AGPLVNVPRE GERVYYFPQG HMEQLEASMH 60 QGLDQQLPSF DLPAKILCKV AEPETDEVYA QITLLPDPDQ NEVTIPDPPP TEPPSCTVHS 120 FCKTLTASDT STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVASDLHGNE WHFRHIFRGQ 180 PRRHLLTTGW SVFVSAKKLV AGDAFIFLRG ENGELRVGVR RLMRLLNNMP SSVISSHSMH 240 LGVLATASHA IATGTLFSVF YKPRTSRSEF IVSLNKYLEA RNHKLLVGMR FKMRFEGEEV 300 PERRFSGTIV GVGDTASSKW LDSEWRSLKV QWDELSSILR PDRVSPWELE PLVASNSTNS 360 PPLQRNKRAR SVLPNSVPDI SGLGMWKSPG DRPSAFQYCD PQRGRDIYPS NNISSITGIS 420 LSYSENGSLP PASTTSMHWS NLREAITESF EPLASKESGE KRQSNGYRLF GIELLEHPNV 480 DETSPMVVSR TVAEERPLCP VDTESDWGSE PSNVNRSDIP SASCEPEKCS MRSQEFHTRQ 540 IRSCTKVHMQ GIAVGRAVDL TQLNCYEDLL RKLENMFEIE GELHVVPKKW QVVYTDCEDD 600 IMMVGDDPWH EFCSMVRKIF IYTTEEAKRL SPKIKLPEND ELIQGKLVLN AQVSTEEQSS 660 SNEGFGC

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MGHIAGTHYP GGPQSGSLGD AIYKELWHAC AGPLVNVPRE GERVYYFPQG HMEQLEASMH  60
QGLDQQLPSF DLPAKILCKV AEPETDEVYA QITLLPDPDQ NEVTIPDPPP TEPPSCTVHS  120
FCKTLTASDT STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVASDLHGNE WHFRHIFRGQ  180
PRRHLLTTGW SVFVSAKKLV AGDAFIFLRG ENGELRVGVR RLMRLLNNMP SSVISSHSMH  240
LGVLATASHA IATGTLFSVF YKPRTSRSEF IVSLNKYLEA RNHKLLVGMR FKMRFEGEEV  300
PERRFSGTIV GVGDTASSKW LDSEWRSLKV QWDELSSILR PDRVSPWELE PLVASNSTNS  360
PPLQRNKRAR SVLPNSVPDI SGLGMWKSPG DRPSAFQYCD PQRGRDIYPS NNISSITGIS  420
LSYSENGSLP PASTTSMHWS NLREAITESF EPLASKESGE KRQSNGYRLF GIELLEHPNV  480
DETSPMVVSR TVAEERPLCP VDTESDWGSE PSNVNRSDIP SASCEPEKCS MRSQEFHTRQ  540
IRSCTKVHMQ GIAVGRAVDL TQLNCYEDLL RKLENMFEIE GELHVVPKKW QVVYTDCEDD  600
IMMVGDDPWH EFCSMVRKIF IYTTEEAKRL SPKIKLPEND ELIQGKLVLN AQVSTEEQSS  660
SNEGFGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	0.0	ARF family protein