PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965516.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 643aa MW: 72308.7 Da PI: 5.9833

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.3	1.3e-22	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_024965516.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_024965516.1 218 NGELRVGVRR 227 999***97 PP
2	Auxin_resp	110	2.4e-36	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a ++k+ vGmRfkm+fe+e+++err+sGt+vgv d+ +++W +S+WrsLk XP_024965516.1 253 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLLVGMRFKMRFEGEEVPERRFSGTIVGVGDTASSKWLDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MGHIAGTHYP GGPQSGSLGD AIYKELWHAC AGPLVNVPRE GERVYYFPQG HMEQLEASMH 60 QGLDQQLPSF DLPAKILCKV VNIQLRAEPE TDEVYAQITL LPDPDQNEVT IPDPPPTEPP 120 SCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAS DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR LLNNMPSSVI 240 SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARNHK LLVGMRFKMR 300 FEGEEVPERR FSGTIVGVGD TASSKWLDSE WRSLKVQWDE LSSILRPDRV SPWELEPLVA 360 SNSTNSPPLQ RNKRARSVLP NSVPDISGLG MWKSPGDRPS AFQYCDPQRG RDIYPSNNIS 420 SITESFEPLA SKESGEKRQS NGYRLFGIEL LEHPNVDETS PMVVSRTVAE ERPLCPVDTE 480 SDWGSEPSNV NRSDIPSASC EPEKCSMRSQ EFHTRQIRSC TKVHMQGIAV GRAVDLTQLN 540 CYEDLLRKLE NMFEIEGELH VVPKKWQVVY TDCEDDIMMV GDDPWHEFCS MVRKIFIYTT 600 EEAKRLSPKI KLPENDELIQ GKLVLNAQVS TEEQSSSNEG FGC

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MGHIAGTHYP GGPQSGSLGD AIYKELWHAC AGPLVNVPRE GERVYYFPQG HMEQLEASMH  60
QGLDQQLPSF DLPAKILCKV VNIQLRAEPE TDEVYAQITL LPDPDQNEVT IPDPPPTEPP  120
SCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR LLNNMPSSVI  240
SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARNHK LLVGMRFKMR  300
FEGEEVPERR FSGTIVGVGD TASSKWLDSE WRSLKVQWDE LSSILRPDRV SPWELEPLVA  360
SNSTNSPPLQ RNKRARSVLP NSVPDISGLG MWKSPGDRPS AFQYCDPQRG RDIYPSNNIS  420
SITESFEPLA SKESGEKRQS NGYRLFGIEL LEHPNVDETS PMVVSRTVAE ERPLCPVDTE  480
SDWGSEPSNV NRSDIPSASC EPEKCSMRSQ EFHTRQIRSC TKVHMQGIAV GRAVDLTQLN  540
CYEDLLRKLE NMFEIEGELH VVPKKWQVVY TDCEDDIMMV GDDPWHEFCS MVRKIFIYTT  600
EEAKRLSPKI KLPENDELIQ GKLVLNAQVS TEEQSSSNEG FGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	0.0	ARF family protein