PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965686.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28478.1 Da    PI: 8.5744
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18106160256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++t++q++ Le+ F+ ++++++ +++eLAkkl+L  rq+ vWFqNrRa+ k
  XP_024965686.1 106 RKKLKLTTDQTTLLEDSFKLHSTLNTGQKQELAKKLNLLPRQIEVWFQNRRARTK 160
                     788899***********************************************98 PP
2HD-ZIP_I/II111.94.2e-36106193188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk++l+++q +lLE+sF+ +++L++ +K+ela++L+l prq++vWFqnrRARtk+kq+E+++e Lk+++++l +en+rL+ke ee r
  XP_024965686.1 106 RKKLKLTTDQTTLLEDSFKLHSTLNTGQKQELAKKLNLLPRQIEVWFQNRRARTKLKQIEQECELLKKCCETLGDENRRLKKELEEAR 193
                     69*********************************************************************************98866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSEEERCNTT LGLGLGLGIG IGVGIKREKQ FKQNKRGFWL DLSLPIRPVK IEPRDHHHQQ  60
HQHEKDDQDS FSSKTTDDQE EDETRMKTSD CSNVDGYINN NNDGSRKKLK LTTDQTTLLE  120
DSFKLHSTLN TGQKQELAKK LNLLPRQIEV WFQNRRARTK LKQIEQECEL LKKCCETLGD  180
ENRRLKKELE EARSCCSLKF DHRHQPPLPL YIQYPSTAAM RHPCDKKGKS DEDTKRVAVV  240
NGGKQAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-25HD-ZIP family protein