PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965713.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 332aa    MW: 36937.2 Da    PI: 7.2834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-107296126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+ C+ f++ G C+ Gd+C+FaHg
  XP_024965713.1 72 YKTRMCQKFLE-GNCRNGDSCTFAHG 96
                    9**********.*************8 PP
2zf-CCCH33.19.4e-11130152325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     +++Cr f+ tG+C+yG++C+F H
  XP_024965713.1 130 MRICRKFYNTGECPYGEKCNFLH 152
                     689******************** PP
3zf-CCCH40.35.4e-13221246126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ + +tG+C +Gd+C+FaHg
  XP_024965713.1 221 WKTRICSKWEATGQCVFGDKCHFAHG 246
                     8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MIQNPFLGGN NGGGENLPQQ NDSNSQFENS NNRPRNPEVN INLPRSTPLL SAVQRSNPPT  60
LPVNRGTTHI FYKTRMCQKF LEGNCRNGDS CTFAHGSNDL REPPPNWQEL VKDNRGGGNW  120
NEDQKIIHRM RICRKFYNTG ECPYGEKCNF LHESPSKFKA EAAVDMGRTR QSSVINIQTV  180
VDHPQTEAVH LLHGNVDAVQ VGTMNSDHPD ALRPSMKATY WKTRICSKWE ATGQCVFGDK  240
CHFAHGLAEL NTPVGRVEGD GQPYAGFSVA PKPFTGPIVE AVATNSATTV PVPQGEVREI  300
AKWKLAHKKL NRIYADWIDD DEDEQVSSSK AD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-74C3H family protein