PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965799.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 507aa    MW: 57239.4 Da    PI: 4.3804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS156.52.4e-481545072374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteA.LaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL +  ea++ g+  la+ ++  ++e asp g +m+R+a+ + +   +                +++   + ++  aa+k+f+e++P+ +fsh
  XP_024965799.1 154 RRLLKAYGEAMEMGQEDLANVIVGCINEKASPLGGTMERVAFNLFQSgNQGD------------YIKQE---SLKNFKAAFKAFYEIFPYGRFSH 233
                     678888999********************************96544202222............22333...37889999*************** PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     ++aN+aIlea+ ++  +vHiiDfdi++G+QWp++l+aL + +++    ++T +    ++s ++ eet+++L ++A++ g++++ + +   ++ +l
  XP_024965799.1 234 FAANSAILEAIMSDsGKVHIIDFDIGEGVQWPTMLDALGKLRKE---TKLTSIRT-GEQSYTSFEETRNQLLDYASASGLKLDVQEI---TIGEL 321
                     **********887779***********************75444...59999999.556999***********************98...88898 PP

            GRAS 190 eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpr 277
                      ++e++ ++ +E+la n++l+l ++   ++ ++s+ +e+Lk+ k+l +k   ++++ + e +++    + +   + e+l++y +l +s+e ++p+
  XP_024965799.1 322 -VNEIEESEdHECLAFNCMLELPHMG--RTRSRSQVKEFLKVAKQLLSKnkgIITIGDGEdVERmkYCGGYSSFIDECLNHYQTLCESMEGNFPE 413
                     .888988877***************8..455555589*********7765558999887654442233467777789*****************9 PP

            GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLv 368
                        e+ri +E  ++++ +++++ +++        +l++ +e  e+ G+   +ls++  ++ak +++  +s  y+++   ++ +++vl  ++ pLv
  XP_024965799.1 414 YLtEARIAMESLFVAPYVSSLLWHKKWV------NLREDSEFKENLGLMGWRLSKESLAEAKEMVKGRESS-YKIKvegQNGNEMVLEYRGAPLV 501
                     8779*******************99998......344445556778888899*****************55.77775566689999********* PP

            GRAS 369 svSaWr 374
                      vSaW+
  XP_024965799.1 502 RVSAWK 507
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MMHPEVLQSF LQQDLDQAGG YGTKMGSYPY DDHQFYCSIS TPDEDSSMIS SDLCFQSILS  60
SDLSTLSNMD DKMQVVFPME NMSQHVEGIE DISDTTLEDA LRWWGESEET GNFDSTENEG  120
LCGSPFLRSG DDLMNHSLML PPDDMEVEGR TSLRRLLKAY GEAMEMGQED LANVIVGCIN  180
EKASPLGGTM ERVAFNLFQS GNQGDYIKQE SLKNFKAAFK AFYEIFPYGR FSHFAANSAI  240
LEAIMSDSGK VHIIDFDIGE GVQWPTMLDA LGKLRKETKL TSIRTGEQSY TSFEETRNQL  300
LDYASASGLK LDVQEITIGE LVNEIEESED HECLAFNCML ELPHMGRTRS RSQVKEFLKV  360
AKQLLSKNKG IITIGDGEDV ERMKYCGGYS SFIDECLNHY QTLCESMEGN FPEYLTEARI  420
AMESLFVAPY VSSLLWHKKW VNLREDSEFK ENLGLMGWRL SKESLAEAKE MVKGRESSYK  480
IKVEGQNGNE MVLEYRGAPL VRVSAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-26GRAS family protein