PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965946.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 112aa    MW: 12680.5 Da    PI: 8.501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.0004614521154
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    rR +++ +++  L++l+ +      +K + a++L++A   Ik L
  XP_024965946.1 14 RRSQKLADKITALQKLVSPY-----GKTDTASVLQEAHISIKLL 52
                    899***************99.....9***********9888866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MQEIECVRER VPMRRSQKLA DKITALQKLV SPYGKTDTAS VLQEAHISIK LLHDQIQNLL  60
QKTQTSTIND GSLQFQETET GLHNRGLCLV PISTPQINSL CEGKQNFMPR SY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.37e-18bHLH family protein