PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966003.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 185aa    MW: 20442 Da    PI: 6.9042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000984163123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+dC+k + +   L  H  +H
  XP_024966003.1 41 YKCKDCDKEYDSFQALGGHRASH 63
                    9*********9999888888777 PP
2zf-C2H211.90.0006988110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk F     L  H+r+H
  XP_024966003.1  88 HECRICGKGFAIGQALGGHMRKH 110
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MGMKMIGNAN TENFVRGNAS LIAEHLEENP DGATSRYHRV YKCKDCDKEY DSFQALGGHR  60
ASHRKLMKET GAHCSGLQFL EESGPKLHEC RICGKGFAIG QALGGHMRKH REMKLDTGQK  120
DSLHNNANAK IWNTTVVEAE EEGFGKEDVE GLRMRVVTPQ ASVPQIEVLH EHVGTSQVAS  180
SIDTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-22C2H2 family protein