PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966041.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26830.7 Da    PI: 8.9171
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n s rqvtfskR++g+lKKA+EL +LCdaeva++ifsstgkl+ey+s
  XP_024966041.1  9 KRIDNISSRQVTFSKRKTGLLKKAKELAILCDAEVALLIFSSTGKLHEYAS 59
                    79***********************************************86 PP
2K-box79.21e-26841711198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++k + +qqe+a+L++++  Lq+++R+llGe+L sL+ ++Lq+Le+qLe  lkk+R  K+++l+++i+el +k   +++enk+L++k+
  XP_024966041.1  84 TSKVKFWQQEAARLRQQLLYLQQSHRQLLGEELASLNAEDLQKLETQLEITLKKVRMNKEQVLTDEIKELNQKRSLIDQENKKLHEKI 171
                     57899*********************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIEIKR IDNISSRQVT FSKRKTGLLK KAKELAILCD AEVALLIFSS TGKLHEYASS  60
SMDTVVERYD KVINEGHDQL LDPTSKVKFW QQEAARLRQQ LLYLQQSHRQ LLGEELASLN  120
AEDLQKLETQ LEITLKKVRM NKEQVLTDEI KELNQKRSLI DQENKKLHEK ITLLHQETAE  180
LQKKIYALRS MDESNKNSSP YSFSIDEAPI SLQLSQPQPQ ENDISAQAMK LRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-65MIKC_MADS family protein