PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966097.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SAP
Protein Properties Length: 441aa    MW: 49052.1 Da    PI: 7.119
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP657.22.5e-20014401454
             SAP   1 mssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqr 95 
                     ms++sssss + ++      gg+ ++ge+egps+srqr    vwpePflealatqvaida+ s+Grlaaa+al+n+fqvc twr vs+sdllwq 
  XP_024966097.1   1 MSTTSSSSSRDGGD------GGNGGAGEFEGPSQSRQRFNSAVWPEPFLEALATQVAIDAALSFGRLAAAPALFNLFQVCRTWRTVSQSDLLWQT 89 
                     89999877764443......44556689******************************************************************* PP

             SAP  96 ltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqh 190
                     ltrriW+r++ll+  W++eyiyrhrtarnfr rr  y+tl+f p    +dn++d+lsCrclalsd +laaGf+dG+vrlf+l trlh+stf+p++
  XP_024966097.1  90 LTRRIWHRNHLLHPSWHDEYIYRHRTARNFRVRRCLYTTLHFPPN---DDNTNDSLSCRCLALSDYHLAAGFSDGSVRLFHLLTRLHLSTFHPHQ 181
                     ******************************************996...667789***************************************** PP

             SAP 191 rdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGs 285
                     r++lG+fsrav Gi+ +d+r+vfa+ldGdihva ++++g  a+rra+lGdvv+dG+lvdf+G++rWw+GlyaGvp rafh+ +++teelvf+GG+
  XP_024966097.1 182 RNHLGPFSRAVCGIFFTDNRVVFASLDGDIHVASVNVPG--APRRAHLGDVVTDGVLVDFTGCNRWWIGLYAGVPNRAFHVRNGNTEELVFIGGT 274
                     *************************************65..9***************************************************** PP

             SAP 286 ltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrf 380
                     ltdP+av+GWh+lt+l e vGr+r+t+++ ava ts++++vfdlr q ++l+eee+ r + v++ da+++a++ v+srGv++vr v +lee+crf
  XP_024966097.1 275 LTDPDAVTGWHLLTDLSEQVGRIRITSEDRAVAFTSSKVLVFDLRSQ-MILGEEEFVRRINVGAADAYDNALMFVNSRGVGNVREVGSLEEMCRF 368
                     *********************************************87.68899****************************************** PP

             SAP 381 rvrgaqrgvlgCvnggyalvy.aggvlrvWeiekkegylyslrervg.evnalvaddrhvavsssdgtihlldfga 454
                       r   +gv+gC+nggy++++ +gg +rvWe+++ + ylys+rervg ++ al+ad+r+va+++sd+tihl+dfga
  XP_024966097.1 369 MAR---GGVIGCMNGGYCIICcSGGGVRVWELNHGQ-YLYSFRERVGdRTSALIADERYVAACTSDNTIHLWDFGA 440
                     999...78*********98752788********966.*********98899************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MSTTSSSSSR DGGDGGNGGA GEFEGPSQSR QRFNSAVWPE PFLEALATQV AIDAALSFGR  60
LAAAPALFNL FQVCRTWRTV SQSDLLWQTL TRRIWHRNHL LHPSWHDEYI YRHRTARNFR  120
VRRCLYTTLH FPPNDDNTND SLSCRCLALS DYHLAAGFSD GSVRLFHLLT RLHLSTFHPH  180
QRNHLGPFSR AVCGIFFTDN RVVFASLDGD IHVASVNVPG APRRAHLGDV VTDGVLVDFT  240
GCNRWWIGLY AGVPNRAFHV RNGNTEELVF IGGTLTDPDA VTGWHLLTDL SEQVGRIRIT  300
SEDRAVAFTS SKVLVFDLRS QMILGEEEFV RRINVGAADA YDNALMFVNS RGVGNVREVG  360
SLEEMCRFMA RGGVIGCMNG GYCIICCSGG GVRVWELNHG QYLYSFRERV GDRTSALIAD  420
ERYVAACTSD NTIHLWDFGA T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-137SAP family protein