PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966167.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 683aa MW: 79987.7 Da PI: 9.0696

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.6e-20	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA ++GF+vr++++k +k+++ i r+fvCs+eg++++++ + e++ r+++ +r+gC+a++k++++k ++ +e++++++ Hn +l+ XP_024966167.1 1 MYRAYADNAGFDVRIHEKKPNKHSD-IQARWFVCSREGNPNKKNFDslemhpGERRYRNTNLKRCGCNACIKIHLMKdRACYEIYEFVETHNRALF 95 6*************999987666.**********999988999999899999***************9999*********9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MYRAYADNAG FDVRIHEKKP NKHSDIQARW FVCSREGNPN KKNFDSLEMH PGERRYRNTN 60 LKRCGCNACI KIHLMKDRAC YEIYEFVETH NRALFNINDH RFSRKNRQMK YTDFKTVLNS 120 SSYKVGVGAR RAHRIQTALN GGFKHTRISE IDFKNFKRDA VACVGNKDAK MLINKLSNRQ 180 DIVPVFFEYK CNEQEPSTTF WADEVARINY KEFGDVISFD GIFRTNKHGM IFVPFLAVDN 240 HKASVVVGSA LISGETIENF TWVLKAFLKC HEKQPVFVII DQCSTMKQAI PMVFTEAKHR 300 LCMWHIMKKV PSKVSVALNQ DPMFNKVINK LVWNIHIGPT EFESRWHEMI DQYNLGDDTW 360 FTEMYEIRHS WIPAYYKDTQ MSGLMKTTLR SESSNSYINI YESFWFDLVQ FLNNYDVDIE 420 KQRYRQSVHE TVTRTTNPKF VTPLRLESNA SSIYSRNVFF YIQKKIKKAV WFCAIEIVEC 480 RDDFKSFMIS HKTKKSFDSI TYLVCRNYST NTVECDCNLF TRNGYFCRHA FKVLINDEVE 540 CIPEKYILHR WKRQLFPVQI QSARVRYGEV DAEKDKCIID VYSNVDDIIS IARNDKSILA 600 RLGRNLDKFM VDIEKEVPYE DPSQQKLDAI RDHLGVSIPD EVDILPPSGL WNKGCGTGKR 660 LVFDLFLGSV LQQSYRTRSG KVL

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MYRAYADNAG FDVRIHEKKP NKHSDIQARW FVCSREGNPN KKNFDSLEMH PGERRYRNTN  60
LKRCGCNACI KIHLMKDRAC YEIYEFVETH NRALFNINDH RFSRKNRQMK YTDFKTVLNS  120
SSYKVGVGAR RAHRIQTALN GGFKHTRISE IDFKNFKRDA VACVGNKDAK MLINKLSNRQ  180
DIVPVFFEYK CNEQEPSTTF WADEVARINY KEFGDVISFD GIFRTNKHGM IFVPFLAVDN  240
HKASVVVGSA LISGETIENF TWVLKAFLKC HEKQPVFVII DQCSTMKQAI PMVFTEAKHR  300
LCMWHIMKKV PSKVSVALNQ DPMFNKVINK LVWNIHIGPT EFESRWHEMI DQYNLGDDTW  360
FTEMYEIRHS WIPAYYKDTQ MSGLMKTTLR SESSNSYINI YESFWFDLVQ FLNNYDVDIE  420
KQRYRQSVHE TVTRTTNPKF VTPLRLESNA SSIYSRNVFF YIQKKIKKAV WFCAIEIVEC  480
RDDFKSFMIS HKTKKSFDSI TYLVCRNYST NTVECDCNLF TRNGYFCRHA FKVLINDEVE  540
CIPEKYILHR WKRQLFPVQI QSARVRYGEV DAEKDKCIID VYSNVDDIIS IARNDKSILA  600
RLGRNLDKFM VDIEKEVPYE DPSQQKLDAI RDHLGVSIPD EVDILPPSGL WNKGCGTGKR  660
LVFDLFLGSV LQQSYRTRSG KVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-67	FAR1 family protein