PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966223.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 284aa    MW: 30017.2 Da    PI: 9.5536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-062952225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C+ f+ +  C++G++C+F H
  XP_024966223.1 29 KSKPCMKFFSMDGCPFGENCHFLH 52
                    678999999999************ PP
2zf-CCCH22.42.2e-0793116326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C  +     Ck+Gd+C+FaHg
  XP_024966223.1  93 SKMCTKYNTAEGCKFGDKCHFAHG 116
                     67899999999************8 PP
3zf-CCCH291.8e-09250274126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C +G+rC+FaHg
  XP_024966223.1 250 YKTKLCENFAK-GCCTFGERCHFAHG 274
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDTRKRGRPE AKANGGAKRS KSESQLGSKS KPCMKFFSMD GCPFGENCHF LHYFPGGYNA  60
VAQVMNLLPA SAVRTPSAPS SIQNSSATPA TKSKMCTKYN TAEGCKFGDK CHFAHGAWEL  120
GKPIVSSQEP IPSCFGNHIE PPPRPAPGVA ASFGASATAK ISVDASLAGA IIGKGGVNSK  180
QICRQTGVKL AIRDHESDAN LRNIELEGTF EQIKEASGMV RELIVSVSST TTAGARVRPA  240
AASGPPMSNY KTKLCENFAK GCCTFGERCH FAHGNGELRK SGVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-64C3H family protein