PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966225.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 246aa    MW: 25847.4 Da    PI: 8.4951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-075478226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k + C  +     Ck+Gd+C+FaHg
  XP_024966225.1 54 KSKMCTKYNTAEGCKFGDKCHFAHG 78
                    567899999*99************8 PP
2zf-CCCH29.31.5e-09212236126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C +G+rC+FaHg
  XP_024966225.1 212 YKTKLCENFAK-GCCTFGERCHFAHG 236
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MDGCPFGENC HFLHYFPGGY NAVAQVMNLL PASAVRTPSA PSSIQNSSAT PATKSKMCTK  60
YNTAEGCKFG DKCHFAHGAW ELGKPIVSSQ EPIPSCFGNH IEPPPRPAPG VAASFGASAT  120
AKISVDASLA GAIIGKGGVN SKQICRQTGV KLAIRDHESD ANLRNIELEG TFEQIKEASG  180
MVRELIVSVS STTTAGARVR PAAASGPPMS NYKTKLCENF AKGCCTFGER CHFAHGNGEL  240
RKSGVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-67C3H family protein