PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966226.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 230aa    MW: 24103.5 Da    PI: 9.0127
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-073862226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k + C  +     Ck+Gd+C+FaHg
  XP_024966226.1 38 KSKMCTKYNTAEGCKFGDKCHFAHG 62
                    56789999**99************8 PP
2zf-CCCH29.41.3e-09196220126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C +G+rC+FaHg
  XP_024966226.1 196 YKTKLCENFAK-GCCTFGERCHFAHG 220
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVVQKDPSQV MNLLPASAVR TPSAPSSIQN SSATPATKSK MCTKYNTAEG CKFGDKCHFA  60
HGAWELGKPI VSSQEPIPSC FGNHIEPPPR PAPGVAASFG ASATAKISVD ASLAGAIIGK  120
GGVNSKQICR QTGVKLAIRD HESDANLRNI ELEGTFEQIK EASGMVRELI VSVSSTTTAG  180
ARVRPAAASG PPMSNYKTKL CENFAKGCCT FGERCHFAHG NGELRKSGVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-65C3H family protein