PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966241.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 720aa    MW: 81232.1 Da    PI: 6.4226
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.83.8e-1033867011318
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d   a++lL++++++asp gd  qRla++f+++L+arla+++s++ kal +++t     ++ ++a++l+   sP+ k+s+
  XP_024966241.1 386 LRTLLITCAQAVAADDRMTANELLKEIRQHASPFGDGAQRLAHCFANGLEARLAGTGSQIHKALVSKKTC---AADYIKAYHLYIASSPFRKISN 477
                     6789************************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ N++I e  e+++r+Hi+Df+i +G+QWp+L+q +++R++gpp+lRiTg++ p++g   ++++eetg+rL+++A++++vpfe+   +akr+e+
  XP_024966241.1 478 FASNRTIREKSENATRIHIVDFGILYGFQWPTLIQRISDRKNGPPRLRITGIDFPQPGfrPAQRIEETGRRLEEYARHFNVPFEYIS-IAKRWEN 571
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L +++gE l+Vn++++ ++llde+v ++s+r+ vL+l+k+++P+++++   + ++n++ Fl+rf eal ++salfd+le+++pre  er+
  XP_024966241.1 572 VKVEDLMLDEGEFLVVNCMYRSKNLLDETVVVDSARNIVLNLIKKINPDIFIHGILNGSYNAPFFLTRFREALFHFSALFDMLETNVPRERAERM 666
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrer 318
                      +Ere++gre+ nv+aceg er er et+++W++r
  XP_024966241.1 667 LLEREIFGREALNVIACEGWERSERPETYKQWHAR 701
                     ********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MDPRYEKTFS SEDGYGDGNG NGIQFGQGIM PVIQDNVNLN TDPILENTFS IYDPVNEGSS  60
GYQSSIYNQS YRGLKFPHLN NPPVPVVGSI PEDDYLHEDC DFSDAILGYI SKVLMEEDIE  120
DRSCMHQESL DLQAAEKPFY DVLGKKYPPS PWPSHSSEGV LTSVDHSRES LDDFPSLAHN  180
TYVGSFSSCS GYSHDASNLQ NVGALNVSYA SSGSSNNTNY VTDGGLDDLC NENQMMWQFR  240
KGVEEANKFL PSGNSFLVSS NAGGFLPQDN NLGNVEGIIS SNSRVRKNSD GDDIAEVEKQ  300
ERSIKQAAIF PDPTLRSEEM DLIFLSSLGR GKDALNSFRD TLRQETRKDT QKDKEEISLS  360
KGKGRGRGKG KGRGRKQNRK KEVIDLRTLL ITCAQAVAAD DRMTANELLK EIRQHASPFG  420
DGAQRLAHCF ANGLEARLAG TGSQIHKALV SKKTCAADYI KAYHLYIASS PFRKISNFAS  480
NRTIREKSEN ATRIHIVDFG ILYGFQWPTL IQRISDRKNG PPRLRITGID FPQPGFRPAQ  540
RIEETGRRLE EYARHFNVPF EYISIAKRWE NVKVEDLMLD EGEFLVVNCM YRSKNLLDET  600
VVVDSARNIV LNLIKKINPD IFIHGILNGS YNAPFFLTRF REALFHFSAL FDMLETNVPR  660
ERAERMLLER EIFGREALNV IACEGWERSE RPETYKQWHA RNLRGWKGRI IYAISCWRPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369381KGKGRGRKQNRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein