PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966303.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 528aa    MW: 58926.8 Da    PI: 5.1804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.41.3e-1341565281374
            GRAS   1 lvelLlecAeavssgdlelaq..alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     l+++Ll+cA+a+++++l+ a+  +l++  + l+s +g+p qRl ay++e+Laar+++s+s +yk+l+++e +   s e l+++ l++e++P++kf
  XP_024966303.1 156 LKQALLACAKAIAENKLTTAEqeQLISMARPLVSVSGEPAQRLGAYMLEGLAARIYESGSIIYKTLKCKEPT---SGELLSYMLLLYEACPYFKF 247
                     6799*************977522688999999***************************************9...99999*************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++l aN aI ea+++e+r+Hi+Df+i qG+QW++L+qaLa+Rp+gpp+lRiTg+++p+++  +   l+ +g+rL+ +Ae+++vpfef+  v  + 
  XP_024966303.1 248 GYLSANGAIAEATKNEDRIHIVDFQIAQGGQWVTLIQALAARPGGPPKLRITGIDDPRNNyaRGGGLNIVGRRLEMLAESCKVPFEFHG-VPVSG 341
                     *********************************************************99999999************************.7999* PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +d+++e+L v+pgEalaVn+++ lh+++desv+ +++rd++L+l+kslsPkvv++veqea+ n++ F++rf ea++yysa+f+s++a+l r+++e
  XP_024966303.1 342 SDIQIEHLGVRPGEALAVNCAFVLHHMPDESVDPRNHRDRLLRLIKSLSPKVVTLVEQEANVNTALFFHRFQEAFSYYSAMFESIDATLERDHRE 436
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri++E+++l+ eivn++aceg+er+erhe l+kW+ r+++aGF+p+pls+++++++k+ll+++ ++ yr++e++g+l+lgW++r Lvs +aW+
  XP_024966303.1 437 RINIEKHCLAGEIVNIIACEGTEREERHELLGKWKTRFRMAGFSPYPLSSYVNATIKTLLENYCDR-YRLQERDGALFLGWMNRDLVSSCAWK 528
                     ****************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MPIYIPSSFG LCCRSLPSQL SATKGIQPAL LLTLINTMDQ NLRFSVHTLE TADNSSSSVG  60
FSPSGSPVSL QDSHSFQPGL YHSPDQTYTS HINPAAGNVD ELELRLRELE AAMLGSDQDF  120
EEFDVSSSWD GYGPEDINQE NDEFRIMEEL TSRGDLKQAL LACAKAIAEN KLTTAEQEQL  180
ISMARPLVSV SGEPAQRLGA YMLEGLAARI YESGSIIYKT LKCKEPTSGE LLSYMLLLYE  240
ACPYFKFGYL SANGAIAEAT KNEDRIHIVD FQIAQGGQWV TLIQALAARP GGPPKLRITG  300
IDDPRNNYAR GGGLNIVGRR LEMLAESCKV PFEFHGVPVS GSDIQIEHLG VRPGEALAVN  360
CAFVLHHMPD ESVDPRNHRD RLLRLIKSLS PKVVTLVEQE ANVNTALFFH RFQEAFSYYS  420
AMFESIDATL ERDHRERINI EKHCLAGEIV NIIACEGTER EERHELLGKW KTRFRMAGFS  480
PYPLSSYVNA TIKTLLENYC DRYRLQERDG ALFLGWMNRD LVSSCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein