PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966304.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 491aa    MW: 54996 Da    PI: 5.0247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.71e-1341194911374
            GRAS   1 lvelLlecAeavssgdlelaq..alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     l+++Ll+cA+a+++++l+ a+  +l++  + l+s +g+p qRl ay++e+Laar+++s+s +yk+l+++e +   s e l+++ l++e++P++kf
  XP_024966304.1 119 LKQALLACAKAIAENKLTTAEqeQLISMARPLVSVSGEPAQRLGAYMLEGLAARIYESGSIIYKTLKCKEPT---SGELLSYMLLLYEACPYFKF 210
                     6799*************977522688999999***************************************9...99999*************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++l aN aI ea+++e+r+Hi+Df+i qG+QW++L+qaLa+Rp+gpp+lRiTg+++p+++  +   l+ +g+rL+ +Ae+++vpfef+  v  + 
  XP_024966304.1 211 GYLSANGAIAEATKNEDRIHIVDFQIAQGGQWVTLIQALAARPGGPPKLRITGIDDPRNNyaRGGGLNIVGRRLEMLAESCKVPFEFHG-VPVSG 304
                     *********************************************************99999999************************.7999* PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +d+++e+L v+pgEalaVn+++ lh+++desv+ +++rd++L+l+kslsPkvv++veqea+ n++ F++rf ea++yysa+f+s++a+l r+++e
  XP_024966304.1 305 SDIQIEHLGVRPGEALAVNCAFVLHHMPDESVDPRNHRDRLLRLIKSLSPKVVTLVEQEANVNTALFFHRFQEAFSYYSAMFESIDATLERDHRE 399
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri++E+++l+ eivn++aceg+er+erhe l+kW+ r+++aGF+p+pls+++++++k+ll+++ ++ yr++e++g+l+lgW++r Lvs +aW+
  XP_024966304.1 400 RINIEKHCLAGEIVNIIACEGTEREERHELLGKWKTRFRMAGFSPYPLSSYVNATIKTLLENYCDR-YRLQERDGALFLGWMNRDLVSSCAWK 491
                     ****************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MDQNLRFSVH TLETADNSSS SVGFSPSGSP VSLQDSHSFQ PGLYHSPDQT YTSHINPAAG  60
NVDELELRLR ELEAAMLGSD QDFEEFDVSS SWDGYGPEDI NQENDEFRIM EELTSRGDLK  120
QALLACAKAI AENKLTTAEQ EQLISMARPL VSVSGEPAQR LGAYMLEGLA ARIYESGSII  180
YKTLKCKEPT SGELLSYMLL LYEACPYFKF GYLSANGAIA EATKNEDRIH IVDFQIAQGG  240
QWVTLIQALA ARPGGPPKLR ITGIDDPRNN YARGGGLNIV GRRLEMLAES CKVPFEFHGV  300
PVSGSDIQIE HLGVRPGEAL AVNCAFVLHH MPDESVDPRN HRDRLLRLIK SLSPKVVTLV  360
EQEANVNTAL FFHRFQEAFS YYSAMFESID ATLERDHRER INIEKHCLAG EIVNIIACEG  420
TEREERHELL GKWKTRFRMA GFSPYPLSSY VNATIKTLLE NYCDRYRLQE RDGALFLGWM  480
NRDLVSSCAW K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein