PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966353.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 335aa MW: 36398.9 Da PI: 8.0206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_024966353.1 129 YECKTCSRTFPSFQALGGHRASH 151 99**********99999998887 PP
2	zf-C2H2	14.8	8.2e-05	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H+r+H XP_024966353.1 214 HECSICGTEFNSGQALGGHMRRH 236 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MEPDVADQTT TAGGGISGDD GGPTNIVKGK RTKRQRLQSS IPFTIVPQSS TSNNPFNSSP 60 ASSSDFPAGS TTTEEEDTAK CLILLSKGHN VSLRNINNDD QFSGYKFNSK RYIQTSTDTV 120 DGFTGIYVYE CKTCSRTFPS FQALGGHRAS HKKPRINEEK RRPPPYTVFS DEDEPSLQFP 180 SRKNNSSSSS SLSLQLNHRV SSTGNTKKSS SKLHECSICG TEFNSGQALG GHMRRHRVAN 240 CTTTTSAAAT TTNTTLSLVP YSPITPMVAD DQDNYQKSRN DGLCLDLDLN LPAPPEASSN 300 QDHRRESSFT FTANPTKQQS AVHLSAAPTL VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-38	C2H2 family protein