PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966385.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 370aa MW: 41942.6 Da PI: 8.1559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_024966385.1 14 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.5	3.5e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ XP_024966385.1 67 RGTFSQQEEKLIIELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGTF SQQEEKLIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVNDDHKAPS GSNERNSQGS YQVSNLDEKP EPPTTAMAAS YPLIDNPPPA 180 THEFFLNRFV TSHERANKQP DSHHLSGFLP FNYTQQQQPP PPPPPDSGDL FFNTESKSSS 240 EMNPEYSNTI SNTLLSAPPL PRSTTIFHQN NWGSSNNGTN GGYFQTNSGG YPWGLTDCTK 300 SQNQINDTVD GEQDYTKWND QFLQVPFLMG KSSIEGKPEP NFHELYHGQQ GVDIYNKHFQ 360 RISTSYGHFS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGTF SQQEEKLIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVNDDHKAPS GSNERNSQGS YQVSNLDEKP EPPTTAMAAS YPLIDNPPPA  180
THEFFLNRFV TSHERANKQP DSHHLSGFLP FNYTQQQQPP PPPPPDSGDL FFNTESKSSS  240
EMNPEYSNTI SNTLLSAPPL PRSTTIFHQN NWGSSNNGTN GGYFQTNSGG YPWGLTDCTK  300
SQNQINDTVD GEQDYTKWND QFLQVPFLMG KSSIEGKPEP NFHELYHGQQ GVDIYNKHFQ  360
RISTSYGHFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	7e-87	MYB family protein