PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966446.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 248aa    MW: 28177.5 Da    PI: 7.0797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1975123355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  XP_024966446.1  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                     9*******.**********954...4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MCGGAILADL IPRSRRLNPT DVWPNSNIYP KLNPFQSEFN HFVREIPPRK RAPSSSGGGH  60
EDNRSGKKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGRKAKVNF PNEGDSYDEN NHQPQTLFHG DLKKSSGVHD DSSVSFSMGS ENEFLPAMVE  180
EKMTKTKAEA ELEENEVQKL SEELMAYESY MKFYEIPYLE GQAVEAPANP DGVVGGGSIE  240
LWSFDDVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-36ERF family protein