PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966460.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 1135aa MW: 126676 Da PI: 9.2814

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	43	75	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT eE e++++a +++G++ Wk++a+++ +R XP_024966460.1 43 PWTDEEVERFYKAYRKYGKD-WKKVAAMVR-TRNS 75 8***************99.******9.7765 PP

Sequence ? help Back to Top
Protein Sequence Length: 1135 aa Download sequence
MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQRKLSDMI GSPWTDEEVE RFYKAYRKYG 60 KDWKKVAAMV RTRNSVMVEA LYTMNRAYLS LPEGTASVVG FIAMVSDHYN ALEGSNSDHD 120 DNEFPKLIPK PRKRSHGLFQ QNGGEDQLQS RLAGSSDRPM SQLKRRESDG CTVRKRTPRF 180 PINHSSRRDN SGFYVSPYKR SQKREVDDVA HGAALALTEA SQRGGSPQVS QSPYRIDRMK 240 TTPLKGRQKT LDTARTKLHG NLIDEDCFEG SSGSGGAENG AYPRDASIFM DTENVAAEDV 300 HQKGRKFYSQ KDDNEFDDGG EACSGTGEGL AVGSIGGKFD IEVADENIEQ SSSQGKRKRN 360 KKLYFRDETS GLDALQTLAD LSLMIQSSKV DSESPVLKED KPPTGISDNN VSGRPGSNGH 420 RRHKTKMSVD KEKLLNEFPR ADASKSGKSK PGRESKVDYK ALSEGKQLDQ SINKSWKRKN 480 KSSSFEALFN DEEKCASKPL CANQDNVPSK NCKSTRLVEY SSSNSNTSRT GADSAVSTAL 540 LPASDGVDLP FKRRNKRKVD PNRISNHGEM KLAKINLKDQ PNKKIEPQEG TLYLKDKAFC 600 CLSSCMVRRW STYEWFYSAI DYPWFAKREF VEYLNHVGLG HIPRLTKVEW GVIRSSLGKP 660 RRFSRNFLHE EREKLWQYRE SVRKHYTELR SGIREGLPTD LARPLSVGQR VIALHPESRE 720 VHDGSVLTVD HDKCRIQFDR PELGVAFVKD IDCMPLNLLD NMPEALRRES SALYRFSMNS 780 GEPRLPQSAT GSSMLYTSRE HFEQSPTIAL MSQRPGHNGS GAPAKAEDNV ISQHAPNAPP 840 CSVSQIQAKE TDIRALSELT RALDKKEAIL AELKLVNDGL MSHENETGIA MKVSESFKKE 900 YAMVLLQLKE ASDQVSSALL NLRQRNTYPG NPLPPWQKLH SSSSGIIGPT SSADNFPSNN 960 QLAPSVVEIV NNSRLEAHKL VHTAVQAMSK IKVEQNVLSS VVAVLDSLGV GKNPIEYGSS 1020 TIRHSEQPNG GTYKHKLNCT PDTSLNNHAS DSKLQRESDE TEATIPFELI VSCVATYHMI 1080 QMCTERQYPP ADVVQMLDSA FTNLHPHCPQ NLPIFREIQM CMGRVKTQIL ALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1135 aa Download sequence

MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQRKLSDMI GSPWTDEEVE RFYKAYRKYG  60
KDWKKVAAMV RTRNSVMVEA LYTMNRAYLS LPEGTASVVG FIAMVSDHYN ALEGSNSDHD  120
DNEFPKLIPK PRKRSHGLFQ QNGGEDQLQS RLAGSSDRPM SQLKRRESDG CTVRKRTPRF  180
PINHSSRRDN SGFYVSPYKR SQKREVDDVA HGAALALTEA SQRGGSPQVS QSPYRIDRMK  240
TTPLKGRQKT LDTARTKLHG NLIDEDCFEG SSGSGGAENG AYPRDASIFM DTENVAAEDV  300
HQKGRKFYSQ KDDNEFDDGG EACSGTGEGL AVGSIGGKFD IEVADENIEQ SSSQGKRKRN  360
KKLYFRDETS GLDALQTLAD LSLMIQSSKV DSESPVLKED KPPTGISDNN VSGRPGSNGH  420
RRHKTKMSVD KEKLLNEFPR ADASKSGKSK PGRESKVDYK ALSEGKQLDQ SINKSWKRKN  480
KSSSFEALFN DEEKCASKPL CANQDNVPSK NCKSTRLVEY SSSNSNTSRT GADSAVSTAL  540
LPASDGVDLP FKRRNKRKVD PNRISNHGEM KLAKINLKDQ PNKKIEPQEG TLYLKDKAFC  600
CLSSCMVRRW STYEWFYSAI DYPWFAKREF VEYLNHVGLG HIPRLTKVEW GVIRSSLGKP  660
RRFSRNFLHE EREKLWQYRE SVRKHYTELR SGIREGLPTD LARPLSVGQR VIALHPESRE  720
VHDGSVLTVD HDKCRIQFDR PELGVAFVKD IDCMPLNLLD NMPEALRRES SALYRFSMNS  780
GEPRLPQSAT GSSMLYTSRE HFEQSPTIAL MSQRPGHNGS GAPAKAEDNV ISQHAPNAPP  840
CSVSQIQAKE TDIRALSELT RALDKKEAIL AELKLVNDGL MSHENETGIA MKVSESFKKE  900
YAMVLLQLKE ASDQVSSALL NLRQRNTYPG NPLPPWQKLH SSSSGIIGPT SSADNFPSNN  960
QLAPSVVEIV NNSRLEAHKL VHTAVQAMSK IKVEQNVLSS VVAVLDSLGV GKNPIEYGSS  1020
TIRHSEQPNG GTYKHKLNCT PDTSLNNHAS DSKLQRESDE TEATIPFELI VSCVATYHMI  1080
QMCTERQYPP ADVVQMLDSA FTNLHPHCPQ NLPIFREIQM CMGRVKTQIL ALVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-159	MYB_related family protein