PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966462.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 1109aa MW: 123827 Da PI: 9.4275

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	44	76	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT eE e++++a +++G++ Wk++a+++ +R XP_024966462.1 44 PWTDEEVERFYKAYRKYGKD-WKKVAAMVR-TRNS 76 8***************99.******9.7765 PP

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence
MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQKRKLSDM IGSPWTDEEV ERFYKAYRKY 60 GKDWKKVAAM VRTRNSVMVE ALYTMNRAYL SLPEGTASVV GFIAMVSDHY NALEGSNSDH 120 DDNEFPKLIP KPRKRSHGLF QQNGGEDQLQ SRLAGSSDRP MSQLKRRESD GCTVRKRTPR 180 FPINHSSRRD NSGFYVSPYK RSQKREVDDV AHGAALALTE ASQRGGSPQV SQSPYRIDRM 240 KTTPLKGRQK TLDTARTKLH GNLIDEDCFE GSSGSGGAEN GAYPRDASIF MDTENVAAED 300 VHQKGRKFYS QKDDNEFDDG GEACSGTGEG LAVGSIGGKF DIEVADENIE QSSSQGKRKR 360 NKKLYFRDET SGLDALQTLA DLSLMIQSSK VDSESPVLKE DKPPTGISDN NVSGRPGSNG 420 HRRHKTKMSV DKEKLLNEFP RADASKSGKS KPGRESKVDY KALSEGKQLD QSINKSWKRK 480 NKSSSFEALF NDEEKCASKP LCANQDNVPS KNCKSTRLVE YSSSNSNTSR TGADSAVSTA 540 LLPASDGVDL PFKRRNKRKV DPNRISNHGE MKLAKINLKD QPNKKIEPQE GTLYLKDKAF 600 CCLSSCMVRR WSTYEWFYSA IDYPWFAKRE FVEYLNHVGL GHIPRLTKVE WGVIRSSLGK 660 PRRFSRNFLH EEREKLWQYR ESVRKHYTEL RSGIREGLPT DLARPLSCRI QFDRPELGVA 720 FVKDIDCMPL NLLDNMPEAL RRESSALYRF SMNSGEPRLP QSATGSSMLY TSREHFEQSP 780 TIALMSQRPG HNGSGAPAKA EDNVISQHAP NAPPCSVSQI QAKETDIRAL SELTRALDKK 840 EAILAELKLV NDGLMSHENE TGIAMKVSES FKKEYAMVLL QLKEASDQVS SALLNLRQRN 900 TYPGNPLPPW QKLHSSSSGI IGPTSSADNF PSNNQLAPSV VEIVNNSRLE AHKLVHTAVQ 960 AMSKIKVEQN VLSSVVAVLD SLGVGKNPIE YGSSTIRHSE QPNGGTYKHK LNCTPDTSLN 1020 NHASDSKLQR ESDETEATIP FELIVSCVAT YHMIQMCTER QYPPADVVQM LDSAFTNLHP 1080 HCPQNLPIFR EIQMCMGRVK TQILALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence

MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQKRKLSDM IGSPWTDEEV ERFYKAYRKY  60
GKDWKKVAAM VRTRNSVMVE ALYTMNRAYL SLPEGTASVV GFIAMVSDHY NALEGSNSDH  120
DDNEFPKLIP KPRKRSHGLF QQNGGEDQLQ SRLAGSSDRP MSQLKRRESD GCTVRKRTPR  180
FPINHSSRRD NSGFYVSPYK RSQKREVDDV AHGAALALTE ASQRGGSPQV SQSPYRIDRM  240
KTTPLKGRQK TLDTARTKLH GNLIDEDCFE GSSGSGGAEN GAYPRDASIF MDTENVAAED  300
VHQKGRKFYS QKDDNEFDDG GEACSGTGEG LAVGSIGGKF DIEVADENIE QSSSQGKRKR  360
NKKLYFRDET SGLDALQTLA DLSLMIQSSK VDSESPVLKE DKPPTGISDN NVSGRPGSNG  420
HRRHKTKMSV DKEKLLNEFP RADASKSGKS KPGRESKVDY KALSEGKQLD QSINKSWKRK  480
NKSSSFEALF NDEEKCASKP LCANQDNVPS KNCKSTRLVE YSSSNSNTSR TGADSAVSTA  540
LLPASDGVDL PFKRRNKRKV DPNRISNHGE MKLAKINLKD QPNKKIEPQE GTLYLKDKAF  600
CCLSSCMVRR WSTYEWFYSA IDYPWFAKRE FVEYLNHVGL GHIPRLTKVE WGVIRSSLGK  660
PRRFSRNFLH EEREKLWQYR ESVRKHYTEL RSGIREGLPT DLARPLSCRI QFDRPELGVA  720
FVKDIDCMPL NLLDNMPEAL RRESSALYRF SMNSGEPRLP QSATGSSMLY TSREHFEQSP  780
TIALMSQRPG HNGSGAPAKA EDNVISQHAP NAPPCSVSQI QAKETDIRAL SELTRALDKK  840
EAILAELKLV NDGLMSHENE TGIAMKVSES FKKEYAMVLL QLKEASDQVS SALLNLRQRN  900
TYPGNPLPPW QKLHSSSSGI IGPTSSADNF PSNNQLAPSV VEIVNNSRLE AHKLVHTAVQ  960
AMSKIKVEQN VLSSVVAVLD SLGVGKNPIE YGSSTIRHSE QPNGGTYKHK LNCTPDTSLN  1020
NHASDSKLQR ESDETEATIP FELIVSCVAT YHMIQMCTER QYPPADVVQM LDSAFTNLHP  1080
HCPQNLPIFR EIQMCMGRVK TQILALVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-138	MYB_related family protein