PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966463.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 604aa MW: 70037 Da PI: 7.364

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.8	6.9e-08	219	264	46	90
FAR1 46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +k+++e +++ +rtgC+a++k +++k + ++e + +e++HnH+l XP_024966463.1 219 RKHQREVWNSNIKRTGCTACVKFRLMKgTTTYECYGFEEDHNHSLL 264 4446777899***************9*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MGFSPTAISL GNPSEKQVSV EFQRDIAIGK TPPLNAISGG VSDGLRSRRK LLRLCKPLHN 60 IHHVCILFLP DLIFPLSDLF SAENLINLLL SNLISSTHFL NLGLVDVNSH EENVDVMEVV 120 TWESNEDFDV GLSPFKKVQK KTVKKLFWYM FEFMFIVIDQ AEQALSISPG STNWYTPVVE 180 EVVKHIIESV YPSLDVAESE YQKYVETAGF ESFDSMVRRK HQREVWNSNI KRTGCTACVK 240 FRLMKGTTTY ECYGFEEDHN HSLLRRDDID LTRKGRQIKF SDQRFVHDAG ISNMSATLAH 300 KLHTSLRGGY EYGGPTVVDY QNYKRDCDDF VGRGDAKVLV DLMTKKRDAD HNFFFEHSMV 360 FVPFTVVDNH NCNVVVGSTL VGHEHVPNYK WLLQAFRKAH SKPPMMILTD QCPAMKQAIA 420 SFSYDLLNNT TFKKQFFKLV WNIHISPDGF ESRWMVLIEE FSLQDHPWLK DMFALRSQWI 480 PAYFKELPMC CLMKTTSRSE SANSFFNSFS KSGNNLFQFM LGFEFALEKQ RREQRRFDYH 540 MRTTLPKWLT YSKLERHACE NYTRSVFFEI HRAAWTCSIK SVNSNEEAET YLIEHLDKRD 600 EKIA

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MGFSPTAISL GNPSEKQVSV EFQRDIAIGK TPPLNAISGG VSDGLRSRRK LLRLCKPLHN  60
IHHVCILFLP DLIFPLSDLF SAENLINLLL SNLISSTHFL NLGLVDVNSH EENVDVMEVV  120
TWESNEDFDV GLSPFKKVQK KTVKKLFWYM FEFMFIVIDQ AEQALSISPG STNWYTPVVE  180
EVVKHIIESV YPSLDVAESE YQKYVETAGF ESFDSMVRRK HQREVWNSNI KRTGCTACVK  240
FRLMKGTTTY ECYGFEEDHN HSLLRRDDID LTRKGRQIKF SDQRFVHDAG ISNMSATLAH  300
KLHTSLRGGY EYGGPTVVDY QNYKRDCDDF VGRGDAKVLV DLMTKKRDAD HNFFFEHSMV  360
FVPFTVVDNH NCNVVVGSTL VGHEHVPNYK WLLQAFRKAH SKPPMMILTD QCPAMKQAIA  420
SFSYDLLNNT TFKKQFFKLV WNIHISPDGF ESRWMVLIEE FSLQDHPWLK DMFALRSQWI  480
PAYFKELPMC CLMKTTSRSE SANSFFNSFS KSGNNLFQFM LGFEFALEKQ RREQRRFDYH  540
MRTTLPKWLT YSKLERHACE NYTRSVFFEI HRAAWTCSIK SVNSNEEAET YLIEHLDKRD  600
EKIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-28	FAR1 family protein