PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966528.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 527aa    MW: 57023.3 Da    PI: 7.8318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.2e-10169193226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+C+F H+
  XP_024966528.1 169 GEKDCAHYMLTRTCKFGDSCRFDHP 193
                     7889********************8 PP
2zf-CCCH31.43.2e-10223246427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C++f++t  C++G++C+F+H++
  XP_024966528.1 223 PDCPYFLKTQRCRFGPKCRFNHPK 246
                     78********************96 PP
3zf-CCCH39.11.2e-12268292327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG+Ck+G++CkF+H++
  XP_024966528.1 268 EPPCVFYMKTGQCKFGSTCKFHHPK 292
                     79*********************96 PP
4zf-CCCH38.32.3e-12349374227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+++tG CkyG++C+++H++
  XP_024966528.1 349 GEVDCPFYLKTGSCKYGATCRYNHPE 374
                     6899********************96 PP
5zf-CCCH31.72.5e-10431452526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+++++tG+C +G+rCk++H+
  XP_024966528.1 431 ECDHYMKTGECMFGERCKYHHP 452
                     7********************9 PP
6zf-CCCH40.74e-13484506527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG CkyG++CkF H+p
  XP_024966528.1 484 NCPYYMKTGACKYGATCKFDHPP 506
                     6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MANQLYGSSS YGYGAGSNSS SIYTSRSIAD QYVPADPTYL SSSRFFGSDP LSSSSTIYSY  60
SSISDRGPSM LYNHKDAIGS ARMAGGGGST LSTLWPGPPG VDVGVSATSV DPLYAGYKRS  120
SSEAIYHQSL LATHNTIGQS EAWYSTNPLV KRPRFESTSS LPVYPQRPGE KDCAHYMLTR  180
TCKFGDSCRF DHPIWVPQGG IPDWKEVPVN DSSESLPERP EAPDCPYFLK TQRCRFGPKC  240
RFNHPKDKLA LSALENGDGS ALPERPSEPP CVFYMKTGQC KFGSTCKFHH PKDILITAGV  300
ENGDGGQMDA LTGGTNGNFH FAPAMLHNSK GLPIRPTCFC SHLLLLIQGE VDCPFYLKTG  360
SCKYGATCRY NHPERYAFNP PGAMLATPAG HMNIGIVSPA PSVLKTVDPR IAQTTLGLAP  420
AIYPQRPGQM ECDHYMKTGE CMFGERCKYH HPVDRTAHAL SAEVLLHNVK LTLAGLPRRE  480
GAINCPYYMK TGACKYGATC KFDHPPPGEV MAGATSQGAS GEEGKDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein