PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966529.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 515aa MW: 55650.6 Da PI: 7.8676

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	169	193	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+C+F H+ XP_024966529.1 169 GEKDCAHYMLTRTCKFGDSCRFDHP 193 7889********************8 PP
2	zf-CCCH	31.5	3.1e-10	223	246	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++t C++G++C+F+H++ XP_024966529.1 223 PDCPYFLKTQRCRFGPKCRFNHPK 246 78********************96 PP
3	zf-CCCH	39.1	1.2e-12	268	292	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_024966529.1 268 EPPCVFYMKTGQCKFGSTCKFHHPK 292 79*********************96 PP
4	zf-CCCH	38.7	1.7e-12	336	362	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_024966529.1 336 PGEVDCPFYLKTGSCKYGATCRYNHPE 362 57899********************96 PP
5	zf-CCCH	31.8	2.5e-10	419	440	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C +G+rCk++H+ XP_024966529.1 419 ECDHYMKTGECMFGERCKYHHP 440 7********************9 PP
6	zf-CCCH	40.7	3.9e-13	472	494	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tG CkyG++CkF H+p XP_024966529.1 472 NCPYYMKTGACKYGATCKFDHPP 494 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MANQLYGSSS YGYGAGSNSS SIYTSRSIAD QYVPADPTYL SSSRFFGSDP LSSSSTIYSY 60 SSISDRGPSM LYNHKDAIGS ARMAGGGGST LSTLWPGPPG VDVGVSATSV DPLYAGYKRS 120 SSEAIYHQSL LATHNTIGQS EAWYSTNPLV KRPRFESTSS LPVYPQRPGE KDCAHYMLTR 180 TCKFGDSCRF DHPIWVPQGG IPDWKEVPVN DSSESLPERP EAPDCPYFLK TQRCRFGPKC 240 RFNHPKDKLA LSALENGDGS ALPERPSEPP CVFYMKTGQC KFGSTCKFHH PKDILITAGV 300 ENGDGGQMDA LTGGTNGNFH FAPAMLHNSK GLPIRPGEVD CPFYLKTGSC KYGATCRYNH 360 PERYAFNPPG AMLATPAGHM NIGIVSPAPS VLKTVDPRIA QTTLGLAPAI YPQRPGQMEC 420 DHYMKTGECM FGERCKYHHP VDRTAHALSA EVLLHNVKLT LAGLPRREGA INCPYYMKTG 480 ACKYGATCKF DHPPPGEVMA GATSQGASGE EGKDA

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MANQLYGSSS YGYGAGSNSS SIYTSRSIAD QYVPADPTYL SSSRFFGSDP LSSSSTIYSY  60
SSISDRGPSM LYNHKDAIGS ARMAGGGGST LSTLWPGPPG VDVGVSATSV DPLYAGYKRS  120
SSEAIYHQSL LATHNTIGQS EAWYSTNPLV KRPRFESTSS LPVYPQRPGE KDCAHYMLTR  180
TCKFGDSCRF DHPIWVPQGG IPDWKEVPVN DSSESLPERP EAPDCPYFLK TQRCRFGPKC  240
RFNHPKDKLA LSALENGDGS ALPERPSEPP CVFYMKTGQC KFGSTCKFHH PKDILITAGV  300
ENGDGGQMDA LTGGTNGNFH FAPAMLHNSK GLPIRPGEVD CPFYLKTGSC KYGATCRYNH  360
PERYAFNPPG AMLATPAGHM NIGIVSPAPS VLKTVDPRIA QTTLGLAPAI YPQRPGQMEC  420
DHYMKTGECM FGERCKYHHP VDRTAHALSA EVLLHNVKLT LAGLPRREGA INCPYYMKTG  480
ACKYGATCKF DHPPPGEVMA GATSQGASGE EGKDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein