PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966549.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22391.9 Da    PI: 8.6301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF627e-201462149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i +++n  vtfskR  gi+KKA+EL++LC++++a++ifs+t k + +
  XP_024966549.1 14 KKIPDERNLAVTFSKRYSGIFKKASELCTLCGVDIAILIFSPTKKAFSF 62
                    678999*************************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MPKLTKGRQK IEMKKIPDER NLAVTFSKRY SGIFKKASEL CTLCGVDIAI LIFSPTKKAF  60
SFGHPCVETI IDRYLAQHPP PSSSISQFLE FHRNANTQEL TGQLANILRQ LEAEKKTGEE  120
LDKMKKINQD RCWWEAPIDT LGVEQLEQLK MAMLELKKNA EKQAERLKVE AANRKPTIPI  180
SDSTEADAAG PSMSRDMD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-51M-type_MADS family protein