PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966648.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 546aa MW: 59868.2 Da PI: 8.5072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.3e-17	60	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l++av + g++Wk+Ia++++ R++ qc +rwqk+l XP_024966648.1 60 KGGWTPEEDETLKKAVGVFKGKCWKKIAEYFP-DRSEVQCLHRWQKVL 106 688***************************.**********986 PP
2	Myb_DNA-binding	63.2	5.1e-20	112	158	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++vk++G+ W++Ia+ ++ gR +kqc++rw+++l XP_024966648.1 112 KGPWTQEEDDKIVELVKRYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 158 79****************************.***********97 PP
3	Myb_DNA-binding	51.6	2.2e-16	164	207	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT +E++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_024966648.1 164 KDAWTLQEELALMNAHRVHGNK-WAEIAKALP-GRTDNAIKNHWNS 207 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MGKVELLECC LENKQSAAAS SSSLSEGSSG IVLPKSPRVS SPTATSPPHR RTTGPIRRAK 60 GGWTPEEDET LKKAVGVFKG KCWKKIAEYF PDRSEVQCLH RWQKVLNPEL IKGPWTQEED 120 DKIVELVKRY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLQ EELALMNAHR 180 VHGNKWAEIA KALPGRTDNA IKNHWNSSLK KKLDFYLATG NLPTVPKNEN GGGDVSKPAS 240 TGKLIACSVT TARTSPGTAE QRKVEADAAD DLECSTPSQD VDASSSFVPS GSTDSEAIGS 300 KSQPSKFDLS HLSRNLVPKF ESCSTINDNP EPLSITPIQS QFPAYGSLYY EPPQIGSFMP 360 TELGVLYMPW NCREYNSNPI TSPRCSSTPP YAEKCSSLHA QTPESILKIA AKSFPNTPSI 420 LRKRKDQSSL SFHKILKADE VATVLTGDKE RKSNDDLEES ESYGGGSCGS ADSLGNGVEG 480 GLASVNNTYN ASPPYRLRYK RKSNNKSVEK QLEFRYVEES CKSEPRSADL AVKDDNSVTK 540 ACSNAS

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MGKVELLECC LENKQSAAAS SSSLSEGSSG IVLPKSPRVS SPTATSPPHR RTTGPIRRAK  60
GGWTPEEDET LKKAVGVFKG KCWKKIAEYF PDRSEVQCLH RWQKVLNPEL IKGPWTQEED  120
DKIVELVKRY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLQ EELALMNAHR  180
VHGNKWAEIA KALPGRTDNA IKNHWNSSLK KKLDFYLATG NLPTVPKNEN GGGDVSKPAS  240
TGKLIACSVT TARTSPGTAE QRKVEADAAD DLECSTPSQD VDASSSFVPS GSTDSEAIGS  300
KSQPSKFDLS HLSRNLVPKF ESCSTINDNP EPLSITPIQS QFPAYGSLYY EPPQIGSFMP  360
TELGVLYMPW NCREYNSNPI TSPRCSSTPP YAEKCSSLHA QTPESILKIA AKSFPNTPSI  420
LRKRKDQSSL SFHKILKADE VATVLTGDKE RKSNDDLEES ESYGGGSCGS ADSLGNGVEG  480
GLASVNNTYN ASPPYRLRYK RKSNNKSVEK QLEFRYVEES CKSEPRSADL AVKDDNSVTK  540
ACSNAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	1e-137	MYB family protein