PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966653.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARR-B
Protein Properties Length: 325aa    MW: 36655.4 Da    PI: 7.8817
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.73.9e-21174225254
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                      r++Wt eLH++F++a  qL G+ +  Pk+il+lm+v+gLt+++v+SHLQk R
  XP_024966653.1 174 IRVEWTRELHDKFLHAAIQL-GEGRCYPKEILDLMDVPGLTRTQVASHLQKCR 225
                     69******************.9*****************************98 PP
2Myb_DNA-binding34.83.8e-11175224147
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 
                      r  WT e+++++++a  qlG g   +k I   m   g+t+ q+ s++qk 
   XP_024966653.1 175 RVEWTRELHDKFLHAAIQLGEGrcYPKEILDLMDvPGLTRTQVASHLQKC 224
                      678*********************************************97 PP
3Response_reg24.51.4e-0921015105
                     SSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
    Response_reg   5 dDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                     d++++++  ++ +l++  + +v+ ad++  al+ll ek   +Dl+l+D ++ ++d +++++  ++ +  l  +v++ +++++ +lealk Ga  +
  XP_024966653.1   2 DEKKDLLASVACLLSSCSF-QVTCADNSGLALRLLSEKAneFDLLLIDRDITDVDVYTFIRLAKRID--LLSMVMSEEDDDTIILEALKNGALLV 93 
                     6677888889999999999.9**************777778*******************9888877..9999********************** PP

                     EESS--HH CS
    Response_reg  98 lsKpfdpe 105
                     l  p  ++
  XP_024966653.1  94 LKRPLTKD 101
                     *9998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MDEKKDLLAS VACLLSSCSF QVTCADNSGL ALRLLSEKAN EFDLLLIDRD ITDVDVYTFI  60
RLAKRIDLLS MVMSEEDDDT IILEALKNGA LLVLKRPLTK DAAMGIRQYA IKERIRKHDE  120
CQNKNTTRNA ARIEERIQDN HRCLGRKRTY RGKPTKHLVY QSSEDYDDRV KTKIRVEWTR  180
ELHDKFLHAA IQLGEGRCYP KEILDLMDVP GLTRTQVASH LQKCRDGRCK YTEKGRMANS  240
SCNISPQGVN GRKFDCKPSL QSDQNEGEDR INLDDLSLSL NGCRTEVNHM NDQSSRGLPT  300
ANGSSRQNHG GQAVDTGSVH VSSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.14e-26ARR-B family protein