PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966751.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 246aa MW: 28673.2 Da PI: 8.6753

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++v+ +G ++W++ ++ g+ R++k+c++rw +yl XP_024966751.1 14 KGPWTREEDNILINYVNSYGHDNWRALPKLAGLMRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ ++++++ lG++ W+tIa++++ gRt++++k+ w+++l XP_024966751.1 67 RGNFSREEEQSIIELHAALGNR-WSTIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MVRAPCCEKM GLKKGPWTRE EDNILINYVN SYGHDNWRAL PKLAGLMRCG KSCRLRWTNY 60 LRPDIKRGNF SREEEQSIIE LHAALGNRWS TIAARLPGRT DNEIKNVWHT HLKKRVKEPE 120 NRCRLSSFQQ KITKLKEEDT ESSLSSSEIN FGGYDRTSYS QLHSPQHSYS EISSAIIMDK 180 YDSQAVRKIQ NVDEDFWSDI FSSENSSNFT TVERGYKYKS SMFDDMQFWF NVLTRGDELS 240 GIYAPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-76	MYB family protein