PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966760.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 263aa    MW: 30495.3 Da    PI: 8.853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+ +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_024966760.1 10 KGPWTEHEDLQLILYVRMFGDRRWDFIANVSGLKRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding49.78.5e-1663108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ + E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_024966760.1  63 RGKMAPHEERLVLELHSKFGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      788899****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGQDDETMRK GPWTEHEDLQ LILYVRMFGD RRWDFIANVS GLKRTGKSCR LRWVNYLHPG  60
LKRGKMAPHE ERLVLELHSK FGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKKTTS  120
RSQSPSLSYC SSSSSICTNN PVVDSMPMIE TKERSFYDTG GVEMFTIMKG KNNSNNNSFK  180
TPTTRFSEST DGQEGHYSMD EIWKDIDLLD DSIKPVFDPY SELTASLTWD SCLSTSWTMD  240
GQEEFGKSMF SLTSKEFSSR LTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-78MYB family protein