PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966873.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 729aa MW: 80230 Da PI: 5.2602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.7e-08	668	721	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 +WT+ E+e l+++v+++ + Wk I kgRt+ ++k++w+++ XP_024966873.1 668 PWTKSEEETLKEGVQRYSSVnnkgiPWKEILDFGCnvfhKGRTPIDLKDKWRNV 721 8**************977999999*98889**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGLVKIAPA ISGDLGKDAR EVVSMRILES 60 LFVHGNEAIV DGDSAQSTKI SFDPSERCEH VLQQILNEQT PEPPAKLEKE KWDVLPFLMH 120 KRSNLPKCML KKLKEAILES SHPLLASLKE RSRVITNVSE NTSPGIDGNS NVQASVKDDL 180 AFLNPRKDKN KFQEKVLQGA DQVEKTAGGT AQHTGREECE MVIEPPLGGA AGKKMMDHDA 240 HAASEALLHS CDVANAQHDQ KQLHCNDDNL PQDTHREGHD EGVPVDSMEN LEFVVKYKVP 300 KNSTQPNALD GEPSSIAKNF MAHDGRLETS TDSERADDEN TDIAAKKEAF LNSQCTLNQD 360 SLAMTELSEI NLCMKCNEGG QLLVCSSDAC PLRVHESCLG SAVTLDENGE FFCPFCAYSR 420 AISKYLKAKR KASLARKNLQ AFSSFTVNSK PNKSCIKHSE LEINEGREMG AFGETTNGNG 480 NGDTVSRADN INRMSIKEDS TRADPLMPIV NDDPSCGEEE AVIASADNSV LPDLDKGVSV 540 ADQSMTEAEE VRQNVGEGCE SPTRMEEHQL SPQAITDCGL KTPSFDGNEI DLVIGECADM 600 QHIQTGCLTQ QTTDLPQNPI PQPSTPKQKC KEKESHRSVE SSCSRRLRKR KVQHTSSAVP 660 LSRRKILPWT KSEEETLKEG VQRYSSVNNK GIPWKEILDF GCNVFHKGRT PIDLKDKWRN 720 VCKGSPNLK

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGLVKIAPA ISGDLGKDAR EVVSMRILES  60
LFVHGNEAIV DGDSAQSTKI SFDPSERCEH VLQQILNEQT PEPPAKLEKE KWDVLPFLMH  120
KRSNLPKCML KKLKEAILES SHPLLASLKE RSRVITNVSE NTSPGIDGNS NVQASVKDDL  180
AFLNPRKDKN KFQEKVLQGA DQVEKTAGGT AQHTGREECE MVIEPPLGGA AGKKMMDHDA  240
HAASEALLHS CDVANAQHDQ KQLHCNDDNL PQDTHREGHD EGVPVDSMEN LEFVVKYKVP  300
KNSTQPNALD GEPSSIAKNF MAHDGRLETS TDSERADDEN TDIAAKKEAF LNSQCTLNQD  360
SLAMTELSEI NLCMKCNEGG QLLVCSSDAC PLRVHESCLG SAVTLDENGE FFCPFCAYSR  420
AISKYLKAKR KASLARKNLQ AFSSFTVNSK PNKSCIKHSE LEINEGREMG AFGETTNGNG  480
NGDTVSRADN INRMSIKEDS TRADPLMPIV NDDPSCGEEE AVIASADNSV LPDLDKGVSV  540
ADQSMTEAEE VRQNVGEGCE SPTRMEEHQL SPQAITDCGL KTPSFDGNEI DLVIGECADM  600
QHIQTGCLTQ QTTDLPQNPI PQPSTPKQKC KEKESHRSVE SSCSRRLRKR KVQHTSSAVP  660
LSRRKILPWT KSEEETLKEG VQRYSSVNNK GIPWKEILDF GCNVFHKGRT PIDLKDKWRN  720
VCKGSPNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	645	651	RRLRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	7e-07	MYB_related family protein