PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966874.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 728aa MW: 80101.9 Da PI: 5.2602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.7e-08	667	720	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 +WT+ E+e l+++v+++ + Wk I kgRt+ ++k++w+++ XP_024966874.1 667 PWTKSEEETLKEGVQRYSSVnnkgiPWKEILDFGCnvfhKGRTPIDLKDKWRNV 720 8**************977999999*98889**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGLVKIAPA ISGDLGKDAR EVVSMRILES 60 LFVHGNEAIV DGDSAQSTKI SFDPSERCEH VLQQILNETP EPPAKLEKEK WDVLPFLMHK 120 RSNLPKCMLK KLKEAILESS HPLLASLKER SRVITNVSEN TSPGIDGNSN VQASVKDDLA 180 FLNPRKDKNK FQEKVLQGAD QVEKTAGGTA QHTGREECEM VIEPPLGGAA GKKMMDHDAH 240 AASEALLHSC DVANAQHDQK QLHCNDDNLP QDTHREGHDE GVPVDSMENL EFVVKYKVPK 300 NSTQPNALDG EPSSIAKNFM AHDGRLETST DSERADDENT DIAAKKEAFL NSQCTLNQDS 360 LAMTELSEIN LCMKCNEGGQ LLVCSSDACP LRVHESCLGS AVTLDENGEF FCPFCAYSRA 420 ISKYLKAKRK ASLARKNLQA FSSFTVNSKP NKSCIKHSEL EINEGREMGA FGETTNGNGN 480 GDTVSRADNI NRMSIKEDST RADPLMPIVN DDPSCGEEEA VIASADNSVL PDLDKGVSVA 540 DQSMTEAEEV RQNVGEGCES PTRMEEHQLS PQAITDCGLK TPSFDGNEID LVIGECADMQ 600 HIQTGCLTQQ TTDLPQNPIP QPSTPKQKCK EKESHRSVES SCSRRLRKRK VQHTSSAVPL 660 SRRKILPWTK SEEETLKEGV QRYSSVNNKG IPWKEILDFG CNVFHKGRTP IDLKDKWRNV 720 CKGSPNLK

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGLVKIAPA ISGDLGKDAR EVVSMRILES  60
LFVHGNEAIV DGDSAQSTKI SFDPSERCEH VLQQILNETP EPPAKLEKEK WDVLPFLMHK  120
RSNLPKCMLK KLKEAILESS HPLLASLKER SRVITNVSEN TSPGIDGNSN VQASVKDDLA  180
FLNPRKDKNK FQEKVLQGAD QVEKTAGGTA QHTGREECEM VIEPPLGGAA GKKMMDHDAH  240
AASEALLHSC DVANAQHDQK QLHCNDDNLP QDTHREGHDE GVPVDSMENL EFVVKYKVPK  300
NSTQPNALDG EPSSIAKNFM AHDGRLETST DSERADDENT DIAAKKEAFL NSQCTLNQDS  360
LAMTELSEIN LCMKCNEGGQ LLVCSSDACP LRVHESCLGS AVTLDENGEF FCPFCAYSRA  420
ISKYLKAKRK ASLARKNLQA FSSFTVNSKP NKSCIKHSEL EINEGREMGA FGETTNGNGN  480
GDTVSRADNI NRMSIKEDST RADPLMPIVN DDPSCGEEEA VIASADNSVL PDLDKGVSVA  540
DQSMTEAEEV RQNVGEGCES PTRMEEHQLS PQAITDCGLK TPSFDGNEID LVIGECADMQ  600
HIQTGCLTQQ TTDLPQNPIP QPSTPKQKCK EKESHRSVES SCSRRLRKRK VQHTSSAVPL  660
SRRKILPWTK SEEETLKEGV QRYSSVNNKG IPWKEILDFG CNVFHKGRTP IDLKDKWRNV  720
CKGSPNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	644	650	RRLRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	7e-07	MYB_related family protein