PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966876.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 719aa MW: 79279.8 Da PI: 5.1991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.6e-08	658	711	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 +WT+ E+e l+++v+++ + Wk I kgRt+ ++k++w+++ XP_024966876.1 658 PWTKSEEETLKEGVQRYSSVnnkgiPWKEILDFGCnvfhKGRTPIDLKDKWRNV 711 8**************977999999*98889**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGDLGKDAR EVVSMRILES LFVHGNEAIV 60 DGDSAQSTKI SFDPSERCEH VLQQILNEQT PEPPAKLEKE KWDVLPFLMH KRSNLPKCML 120 KKLKEAILES SHPLLASLKE RSRVITNVSE NTSPGIDGNS NVQASVKDDL AFLNPRKDKN 180 KFQEKVLQGA DQVEKTAGGT AQHTGREECE MVIEPPLGGA AGKKMMDHDA HAASEALLHS 240 CDVANAQHDQ KQLHCNDDNL PQDTHREGHD EGVPVDSMEN LEFVVKYKVP KNSTQPNALD 300 GEPSSIAKNF MAHDGRLETS TDSERADDEN TDIAAKKEAF LNSQCTLNQD SLAMTELSEI 360 NLCMKCNEGG QLLVCSSDAC PLRVHESCLG SAVTLDENGE FFCPFCAYSR AISKYLKAKR 420 KASLARKNLQ AFSSFTVNSK PNKSCIKHSE LEINEGREMG AFGETTNGNG NGDTVSRADN 480 INRMSIKEDS TRADPLMPIV NDDPSCGEEE AVIASADNSV LPDLDKGVSV ADQSMTEAEE 540 VRQNVGEGCE SPTRMEEHQL SPQAITDCGL KTPSFDGNEI DLVIGECADM QHIQTGCLTQ 600 QTTDLPQNPI PQPSTPKQKC KEKESHRSVE SSCSRRLRKR KVQHTSSAVP LSRRKILPWT 660 KSEEETLKEG VQRYSSVNNK GIPWKEILDF GCNVFHKGRT PIDLKDKWRN VCKGSPNLK

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MAANCSTAPT IQWNWVIEAL ANFEQVDTST LIGDLGKDAR EVVSMRILES LFVHGNEAIV  60
DGDSAQSTKI SFDPSERCEH VLQQILNEQT PEPPAKLEKE KWDVLPFLMH KRSNLPKCML  120
KKLKEAILES SHPLLASLKE RSRVITNVSE NTSPGIDGNS NVQASVKDDL AFLNPRKDKN  180
KFQEKVLQGA DQVEKTAGGT AQHTGREECE MVIEPPLGGA AGKKMMDHDA HAASEALLHS  240
CDVANAQHDQ KQLHCNDDNL PQDTHREGHD EGVPVDSMEN LEFVVKYKVP KNSTQPNALD  300
GEPSSIAKNF MAHDGRLETS TDSERADDEN TDIAAKKEAF LNSQCTLNQD SLAMTELSEI  360
NLCMKCNEGG QLLVCSSDAC PLRVHESCLG SAVTLDENGE FFCPFCAYSR AISKYLKAKR  420
KASLARKNLQ AFSSFTVNSK PNKSCIKHSE LEINEGREMG AFGETTNGNG NGDTVSRADN  480
INRMSIKEDS TRADPLMPIV NDDPSCGEEE AVIASADNSV LPDLDKGVSV ADQSMTEAEE  540
VRQNVGEGCE SPTRMEEHQL SPQAITDCGL KTPSFDGNEI DLVIGECADM QHIQTGCLTQ  600
QTTDLPQNPI PQPSTPKQKC KEKESHRSVE SSCSRRLRKR KVQHTSSAVP LSRRKILPWT  660
KSEEETLKEG VQRYSSVNNK GIPWKEILDF GCNVFHKGRT PIDLKDKWRN VCKGSPNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	635	641	RRLRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	7e-07	MYB_related family protein