PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966890.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 427aa MW: 46064.1 Da PI: 9.5022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	190	212	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F+ ++L++H+ + H XP_024966890.1 190 VCSQCGEVFPKMESLEHHQAVrH 212 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MALLTFPSSS ETQKVQTRRK EIQPKSKPKS KPKPISQNPS SSSSSWDQFK NLLTCKQMDV 60 VHGRSNKVHI PVKNSNGYSK LSSCSSICSF RDVVHGNTRV VDRADNSPES SSVGLDSGLL 120 SRKKQSTTGG GSSSSSSSSR TLAGSMRSNG PGSHTSCSRG MQFRKLSGCY ECHAIVDPSR 180 YTLPRSSICV CSQCGEVFPK MESLEHHQAV RHAVSELGPE DSGRNIVEII FKSSWLKRDH 240 PIFTIERILK VHNTRRTIQR FEDCRDAVKI RANATASRCA ADGNELLRFH CTTLSCSLGS 300 RNSSSLCSSV PGCGVCTIIR HGFQGPKSGG IGGGDGGAKG GVRTTASSGR AHDCLGVDAH 360 GRRAMLVCRV IAGKVKRVGE DAPPEEDGPY DSVAGYAGLY SNLEELYVFN PRAILPCFVV 420 IYKTLES

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MALLTFPSSS ETQKVQTRRK EIQPKSKPKS KPKPISQNPS SSSSSWDQFK NLLTCKQMDV  60
VHGRSNKVHI PVKNSNGYSK LSSCSSICSF RDVVHGNTRV VDRADNSPES SSVGLDSGLL  120
SRKKQSTTGG GSSSSSSSSR TLAGSMRSNG PGSHTSCSRG MQFRKLSGCY ECHAIVDPSR  180
YTLPRSSICV CSQCGEVFPK MESLEHHQAV RHAVSELGPE DSGRNIVEII FKSSWLKRDH  240
PIFTIERILK VHNTRRTIQR FEDCRDAVKI RANATASRCA ADGNELLRFH CTTLSCSLGS  300
RNSSSLCSSV PGCGVCTIIR HGFQGPKSGG IGGGDGGAKG GVRTTASSGR AHDCLGVDAH  360
GRRAMLVCRV IAGKVKRVGE DAPPEEDGPY DSVAGYAGLY SNLEELYVFN PRAILPCFVV  420
IYKTLES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-126	C2H2 family protein